Pixelguy14
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df94d50954
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Implemented more multithreaded precautions in precalculations and preprocessing pipeline, added concurrency tests and validations on several datacentric functions, refractored preprocessing pipeline, added visual upgrades to the UI and a clear session and bug report buttons
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2026-02-13 13:42:41 -06:00 |
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Pixelguy14
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0164e54d77
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Fixed issues in the UI, added benchmark to compare with old juliaMSI library with the new custom one, incorporating platform detection and memory for amplifying cache pools
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2025-12-08 11:25:42 -06:00 |
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Pixelguy14
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b95b8e500c
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finished frontend preprocessing UI connection, small changes to interactivity
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2025-12-01 12:11:49 -06:00 |
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Pixelguy14
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8b1c2d2722
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simplified imzML parsing, finished interactivity for preprocessing in frontend / backend, and processing spectrums is now possible. added n Spectrum plotting
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2025-11-30 18:12:31 -06:00 |
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Pixelguy14
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11c181b3b3
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Interface ready for preprocessing steps handling. style altered to support modular preprocessing pipeline, finished precalculations and preprocessing code, and its respective testing script, added preprocessingpipeline, a handler for the low level functions of preprocessing to work with the high level MSIData in the genie environment.
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2025-11-29 21:47:51 -06:00 |
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Pixelguy14
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8fa92dc0e5
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improved preprocessing UI, added selective spectrum plot accordig to type (centroid, profile), potentially fixed a bug to retrieve folders on dropdown selectors in startup, improved preprocessing functions and test suite, testing a version control for preprocessing steps
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2025-11-17 13:31:37 -06:00 |
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Pixelguy14
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3439a8a4dd
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Added mask interface accessible from the UI, with it you can create slices from your masks or your images of the samples, included masking in the main processing, on the spectra creation, and on the 3d surface plot, started with interface for pre processing spectral data
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2025-11-04 17:20:05 -06:00 |
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Pixelguy14
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e13b5ef0cc
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finished mask creator suite, a new route on the JuliaMSI which helps to create binary masks using either slices or added images, with drawing capability, which in turn will help in the future get more accurate results without extra ambiental noise, added preprocessing test pipeline, along with functions, fixed windows route error for batch processing
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2025-10-31 12:05:03 -06:00 |
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Pixelguy14
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39c92ba850
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bulk and batch processing for multiple imzml and multiple m/z is now available, folder organization for imzml slices in public folder, JSON tracking of processed datasets to save memory time, multiple performance optimizations and UI bug fixes, metadata viewing for all processed files, comparative view between multiple datasets
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2025-10-21 11:56:15 -06:00 |
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Pixelguy14
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39fe2bf52c
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UI now has support for mzml to imzml conversion, made small optimizations to the src folder's API to improve performance
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2025-10-16 10:49:16 -06:00 |
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Pixelguy14
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2fd2b90513
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altered imzML parser to be compatible with timsconverter, small improvements on the UI, other small bug fixes done
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2025-10-13 22:05:56 -06:00 |
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Pixelguy14
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f35acd1d0f
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updated functions to iterate faster to create imzml images (find_mass, get_mz_slice, _iterate_spectra_fast, get_total_spectrum) metadata adquisition and saving, updated docstrings, started work for parser to detect 4 cases, profile uncompressed (current), profile compressed, centroid uncompressed, centroid compressed
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2025-10-09 12:00:00 -06:00 |
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Pixelguy14
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22c8d9637b
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integrated MSI_src API into the UI, fixed interface elements, made some processes asynchronous, modified spectrum plots, added sum spectrum, removed use of obsolete julia_mzML_imzML library
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2025-10-02 13:28:15 -06:00 |
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Pixelguy14
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074186573c
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Renamed to JuliaMSI
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2025-03-19 09:50:27 -06:00 |
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Pixelguy14
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2bd2e819a4
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Concept error in Sum spectrum, changed to Mean spectrum
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2025-03-13 13:49:49 -06:00 |
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Pixelguy14
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421d594b99
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Added test data link in Readme, fixed typo
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2025-03-05 12:29:12 -06:00 |
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Pixelguy14
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0456abb70b
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Smaller changes to the styling, altered topology layout to use more space
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2025-02-19 21:19:20 -06:00 |
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Pixelguy14
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14af947433
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Minor text corrections, file loading corrections
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2025-02-19 11:32:34 -06:00 |
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Pixelguy14
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e63f9e29e5
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SUM spectrum now loads when loading mzML
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2025-02-15 17:58:39 -06:00 |
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Pixelguy14
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e3e987f0cd
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Fixed some errors to get ready for release
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2025-02-15 15:40:13 -06:00 |
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Pixelguy14
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455d88cbb7
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Included environment variable to set up production, fixed plot errors and optical image load, started mzML to imzML function
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2025-02-13 15:34:13 -06:00 |
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Pixelguy14
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63c7428214
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Implemented an experimental executable for all systems, fixed a few errors, implemented first try for a median filter for the slices in Julia
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2025-02-10 15:34:30 -06:00 |
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Pixelguy14
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59630bdd95
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Now the comparative view offers more options to compare to, fixed small mistakes
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2025-02-08 18:36:49 -06:00 |
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Pixelguy14
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47bba11f15
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Small fixes regarding the spectra, topographic and surface plots
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2025-02-06 15:24:29 -06:00 |
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Pixelguy14
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fe6508ead8
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added better margins for image views, implemented upload of optical image and transparency slider
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2025-02-03 22:53:08 -06:00 |
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Pixelguy14
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fdd625d3e0
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Bitmap is now normalized in creation, which evenly distributes colors of the colorTable better, now IntQuant allows for coloLevel adjustments
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2025-01-30 00:40:01 -06:00 |
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Pixelguy14
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df0d82910b
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Alternative versions of SaveBitMap and IntQuant for adjustments to the color level input
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2025-01-29 15:55:30 -06:00 |
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Pixelguy14
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4ea5d8e119
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Now the file picker allows for mzML choosing, minor changes to the colorbarplots
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2025-01-28 00:11:19 -06:00 |
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Pixelguy14
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e5e6284d53
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first patch to fix colorbar coherence with R
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2025-01-27 18:10:44 -06:00 |
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Pixelguy14
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7667bc26e9
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Images are now plots, now you can select the pixel of the plot to create a spectra according to those coordenates, gave more clearness to the code by creating functions for some processes
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2025-01-26 13:48:18 -06:00 |
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Pixelguy14
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09e4a015e0
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Added plot interaction to the UI, improved boot loading, modified UI to accomodate for these changes
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2025-01-22 23:58:06 -06:00 |
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Pixelguy14
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bf50d0cb0c
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started the inclusion of click interaction for plots
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2025-01-20 16:24:19 -06:00 |
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Pixelguy14
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d18b113641
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added time measurements for main functions of the app
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2025-01-19 17:07:04 -06:00 |
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Pixelguy14
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c92576d5a5
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Finished tabs and compare views, added file search to ease access to files, corrected minimal fixes
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2025-01-16 16:22:32 -06:00 |
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Pixelguy14
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ddc690b659
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make buttons disabled when other process is running, added tabs, added comparative view, added rotation to taller images
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2025-01-15 21:15:02 -06:00 |
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Pixelguy14
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13a5f7f222
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3d plot fixes and UI corrections
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2025-01-15 15:45:03 -06:00 |
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Pixelguy14
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645d569f03
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Finished the 3d plot topology for images, added contour plots for images, added algebra, fixed image vertical flipping, experimental changes for a faster first boot
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2025-01-14 20:57:42 -06:00 |
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Pixelguy14
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e5b796fce0
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Better image search, 3d images ongoing
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2025-01-13 00:56:12 -06:00 |
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Pixelguy14
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04f7a107da
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Quicker start for the app, better UI, More responsiveness, code cleaning, and more readability for the code
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2025-01-11 22:14:24 -06:00 |
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Pixelguy14
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d30b5d173b
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Set maximum height to images to avoid extension of page size
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2024-11-06 14:13:54 -06:00 |
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José Julián Sierra Álvarez
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ad97065360
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Corrected an issue related to the colorbar plot
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2024-09-19 20:59:32 -06:00 |
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José Julián Sierra Álvarez
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1caf0a76c3
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Added Colorbar for each slice of scan
improved UI, better response, better bug report, minor fixes
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2024-09-18 21:15:18 -06:00 |
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José Julián Sierra Álvarez
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2aaa53ee42
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Optimized memory cleaning, Improved UX/UI design
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2024-09-13 17:11:32 -06:00 |
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José Julián Sierra Álvarez
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d955c9f0a0
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Add files via upload
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2024-09-11 16:23:09 -06:00 |
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José Julián Sierra Álvarez
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60441a28d8
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Added Statistics for mean plot values
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2024-09-11 12:35:15 -06:00 |
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Pixelguy14
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cd56bd5e4a
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added plots, resolved some issues
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2024-08-21 14:44:13 -06:00 |
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Pixelguy14
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3fd628f5cf
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Updated routes for files and cleaned the interface
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2024-08-21 11:45:50 -06:00 |
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