311 lines
18 KiB
HTML
311 lines
18 KiB
HTML
<template>
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<header id="header">
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<img src="/css/LABI_logo.jpeg" alt="Labi Logo Icon" id="imgLogo">
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<div>
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<h4>Julia mzML imzML analysis GUI </h4>
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<h6>Please make sure the ibd, the mzML and the imzML files are located in the same directory and have the same name.</h6>
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<h6>It may take a while to generate the image and the plot, please be patient.</h6>
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<h6>To generate the contour or surface plots, you have to select the desired image first using the interface.</h6>
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</div>
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</header>
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<div id="extDivStyle" class="row col-12 q-pa-xl">
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<div class="row col-7">
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<!-- Left DIV -->
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<div id="intDivStyle" class="st-col col-12 st-module">
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<!--<q-file v-model="file_route" filled="" label="Select your imzML file" accept=".imzML"></q-file>-->
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<!--<q-input id="textRoute" standout="custom-standout" v-model="file_route" label="Insert the route to your imzML file"></q-input>-->
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<h6>Search for your imzML file in your device</h6>
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<q-btn id="btnStyle" icon="search" class="q-ma-sm" v-on:click="btnSearch=true" label="Search in your device for the imzML file"></q-btn>
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<!--<p>{{full_route}}</p>-->
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<div class="row st-col col-12">
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<!--<q-input id="textName" class="col-9" standout="custom-standout" v-model="file_name" label="Insert the name of your imzML file"></q-input>-->
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<q-btn-dropdown
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id="btnStyle"
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class="q-ma-sm"
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:loading="progressPlot"
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:disable="btnPlotDisable"
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label="Generate Plots"
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icon="play_arrow"
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>
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<template v-slot:loading>
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<q-spinner-hourglass class="on-left" />
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Loading Plot
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</template>
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<q-list>
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<q-item clickable v-close-popup v-on:click="createSumPlot=true">
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<q-item-section>
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<q-item-label>Sum Spectrum Plot</q-item-label>
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</q-item-section>
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</q-item>
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<q-item clickable v-close-popup v-on:click="imageCPlot=true">
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<q-item-section>
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<q-item-label>Image Contour Plot</q-item-label>
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</q-item-section>
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</q-item>
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<q-item clickable v-close-popup v-on:click="triqCPlot=true">
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<q-item-section>
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<q-item-label>TrIQ Contour Plot</q-item-label>
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</q-item-section>
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</q-item>
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<q-item clickable v-close-popup v-on:click="image3dPlot=true">
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<q-item-section>
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<q-item-label>Image 3D Plot</q-item-label>
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</q-item-section>
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</q-item>
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<q-item clickable v-close-popup v-on:click="triq3dPlot=true">
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<q-item-section>
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<q-item-label>TrIQ 3D Plot</q-item-label>
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</q-item-section>
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</q-item>
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</q-list>
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</q-btn-dropdown>
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</div>
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<p id="lblFullRoute">full route: {{full_route}} {{warning_fr}}</p>
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<!-- Variable Manipulation -->
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<div class="row">
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<div class="st-col col-12 col-sm">
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<q-input standout="custom-standout" id="textNmass" step="0.01" v-model="Nmass" label="Mass-to-charge ratio of interest" type="number" :rules="[ val => !!val || '* Required', val => val >= 0.0 && val <= 2000.0 || 'Need positive mass values',]"></q-input>
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</div>
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<div class="st-col col-12 col-sm">
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<q-input standout="custom-standout" id="textTol" step="0.01" v-model="Tol" label="Mass-to-charge ratio tolerance" type="number" :rules="[val => !!val || '* Required', val => val >= 0.0 && val <= 1.0 || 'Needs to be in range between 0 and 1',]"></q-input>
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</div>
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</div>
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<div class="row">
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<div class="st-col col-12 col-sm">
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<q-toggle id="btnEnableTriq" v-on:click="triqEnabled" v-model="triqEnabled" color="blue" label="Add Threshold Intensity Quantization (TrIQ)!"></q-toggle>
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</div>
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</div>
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<!-- Triq Variable Manipulation -->
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<div class="row">
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<div class="st-col col-12 col-sm-8">
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<q-input standout="custom-standout" id="textTriqProb" step="0.01" v-model="triqProb" label="TrIQ probability" type="number" :rules="[
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val => triqEnabled ? ( '* Required', val >= 0 && val <= 1 || 'Needs to be in range between 0 and 1') : true
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]" :readonly="!triqEnabled" :disable="!triqEnabled"></q-input>
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</div>
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<div class="st-col col-12 col-sm-4">
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<q-input standout="custom-standout" id="textTriqColor" step="1" v-model="triqColor" label="TrIQ color levels" type="number" :rules="[
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val => triqEnabled ? ( '* Required', val >= 0 && val <= 256 || 'Needs to be in range between 1 and 256') : true
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]" :readonly="!triqEnabled" :disable="!triqEnabled"></q-input>
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</div>
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</div>
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<div class="row">
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<q-btn id="btnStyle" :loading="progress" class="q-ma-sm" :disabled="btnStartDisable" icon="play_arrow" v-on:click="mainProcess=true" padding="lg" label="Main process">
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<template v-slot:loading>
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<q-spinner-hourglass class="on-left" />
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Loading...
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</template>
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</q-btn>
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<q-btn id="btnStyle" icon="zoom_out_map" class="q-ma-sm on-right" v-on:click="CompareBtn=true" padding="sm" label="Compare"></q-btn>
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</div>
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<p>{{msg}}</p>
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</div>
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</div>
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<div class="row col-5">
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<!-- Right DIV -->
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<div id="intDivStyle" class="st-col col-12 col-sm st-module">
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<st-tabs id="tabHeader":ids="tabIDs" :labels="tabLabels" v-model="selectedTab" no-arrows></st-tabs>
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<q-tab-panels v-model="selectedTab">
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<q-tab-panel name="tab0">
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<!-- Content for Tab 0 -->
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<!-- Btn image changer -->
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<h6>Image Visualizer</h6>
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<div>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinus=true"></q-btn>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlus=true"></q-btn>
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</div>
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<!-- Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="st-col col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
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</div>
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<div class="st-col col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
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</div>
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</div>
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<p>{{msgimg}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab1">
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<!-- Content for Tab 1 -->
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<!-- Triq Btn image changer -->
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<h6>TrIQ Visualizer</h6>
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<div>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinusT=true"></q-btn>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlusT=true"></q-btn>
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</div>
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<!-- Triq Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
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</div>
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<div class="col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
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</div>
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</div>
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<p>{{msgtriq}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab2">
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<!-- Content for Tab 2 -->
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<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab3">
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<!-- Content for Tab 3 -->
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<plotly id="plotStyle" :data="plotdataC" :layout="plotlayoutC" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab4">
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<!-- Content for Tab 4 -->
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<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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</q-tab-panels>
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</div>
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</div>
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</div>
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<q-dialog v-model="warning_msg">
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<q-card>
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<q-card-section>
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<div class="text-h6">Warning</div>
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</q-card-section>
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<q-card-section class="q-pt-none">
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{{msg}}
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</q-card-section>
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<q-card-actions align="right">
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<q-btn flat label="Ok" style="color:#009f90" v-close-popup />
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</q-card-actions>
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</q-card>
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</q-dialog>
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<q-dialog v-model="CompareDialog" full-width>
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<q-card>
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<q-card-section>
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<div class="text-h6">Compare two diferent images or plots in a larger screen</div>
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</q-card-section>
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<q-card-section class="q-pt-none col-12">
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<div class="row">
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<div class="col-6">
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<st-tabs id="tabHeader":ids="tabIDs" :labels="tabLabels" v-model="selectedTab"></st-tabs>
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<q-tab-panels v-model="selectedTab">
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<q-tab-panel name="tab0">
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<!-- Content for Tab 0 -->
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<!-- Btn image changer -->
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<div>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinus=true"></q-btn>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlus=true"></q-btn>
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</div>
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<!-- Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="st-col col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
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</div>
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<div class="st-col col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
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</div>
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</div>
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<p>{{msgimg}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab1">
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<!-- Content for Tab 1 -->
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<!-- Triq Btn image changer -->
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<div>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinusT=true"></q-btn>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlusT=true"></q-btn>
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</div>
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<!-- Triq Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
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</div>
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<div class="col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
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</div>
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</div>
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<p>{{msgtriq}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab2">
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<!-- Content for Tab 2 -->
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<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab3">
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<!-- Content for Tab 3 -->
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<plotly id="plotStyle" :data="plotdataC" :layout="plotlayoutC" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab4">
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<!-- Content for Tab 4 -->
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<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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</q-tab-panels>
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</div>
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<div class="col-6">
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<st-tabs id="tabHeader" :ids="CompTabIDs" :labels="CompTabLabels" v-model="CompSelectedTab" outside-arrows mobile-arrows></st-tabs>
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<q-tab-panels v-model="CompSelectedTab">
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<q-tab-panel name="tab0">
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<!-- Content for Tab 0 -->
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<!-- Btn image changer -->
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<div>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinus=true"></q-btn>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlus=true"></q-btn>
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</div>
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<!-- Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="st-col col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
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</div>
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<div class="st-col col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
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</div>
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</div>
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<p>{{msgimg}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab1">
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<!-- Content for Tab 1 -->
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<!-- Triq Btn image changer -->
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<div>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinusT=true"></q-btn>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlusT=true"></q-btn>
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</div>
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<!-- Triq Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
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</div>
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<div class="col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
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</div>
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</div>
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<p>{{msgtriq}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab2">
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<!-- Content for Tab 2 -->
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<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab3">
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<!-- Content for Tab 3 -->
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<plotly id="plotStyle" :data="plotdataC" :layout="plotlayoutC" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab4">
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<!-- Content for Tab 4 -->
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<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="q-pa-none q-ma-none"></plotly>
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</q-tab-panel>
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</q-tab-panels>
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</div>
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</div>
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</q-card-section>
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<q-card-actions align="right">
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<q-btn flat label="Done" style="color:#009f90" v-close-popup />
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</q-card-actions>
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</q-card>
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</q-dialog>
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</template>
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