1031 lines
55 KiB
HTML
1031 lines
55 KiB
HTML
<header id="header">
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<img src="/css/LABI_logo.png" alt="Labi Logo Icon" id="imgLogo">
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<div>
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<h4>JuliaMSI </h4>
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</div>
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</header>
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<!--
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<div v-if="is_initializing" class="loading-overlay">
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<div class="loading-content">
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<q-spinner-hourglass color="white" size="4em" />
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<div class="q-mt-md text-white text-h6">{{ initialization_message }}</div>
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</div>
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</div>
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-->
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<div id="extDivStyle" class="row col-12 q-pa-xl">
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<div class="row col-6">
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<!-- Left DIV -->
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<div id="intDivStyle-left" class="st-col col-12 st-module">
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<q-tabs v-model="left_tab" dense class="text-grey" indicator-color="primary" align="justify">
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<q-tab name="pre_treatment" label="Pre-Treatment"></q-tab>
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<q-tab name="generator" label="Slice Generator"></q-tab>
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<q-tab name="converter" label="Converter"></q-tab>
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</q-tabs>
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<q-separator></q-separator>
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<q-tab-panels v-model="left_tab" animated>
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<q-tab-panel name="pre_treatment">
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<div class="text-h6">imzML & mzML Data Pre-Treatment</div>
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<!-- File Selection & Batch Controls (keep existing) -->
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<div class="row items-center">
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<q-input standout="custom-standout" class="q-ma-sm cursor-pointer col" v-model="full_route" readonly
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:label="batch_file_count > 0 ? batch_file_count + ' file(s) in batch' : 'Select an imzMl / mzML file'"
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v-on:click="!is_processing && (btnSearch=true)" :disable="is_processing">
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<template v-slot:append>
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<q-icon name="search" v-on:click="!is_processing && (btnSearch=true)" class="cursor-pointer" />
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</template>
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</q-input>
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<q-btn class="q-ma-sm" icon="add" v-on:click="btnAddBatch=true" label="Add" :disable="is_processing"></q-btn>
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<q-btn class="q-ma-sm" icon="clear" v-on:click="clear_batch_btn=true" :disable="is_processing || batch_file_count === 0"
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label="Clear"></q-btn>
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</div>
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<!-- Mask Configuration -->
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<div class="row items-center q-mb-md">
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<q-toggle v-model="maskEnabled" label="Apply Mask During Preprocessing" color="green" class="q-mr-md" :disable="is_processing" />
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</div>
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<!-- Subset Processing -->
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<q-card class="q-mb-md" flat bordered>
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<q-card-section>
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<div class="row items-center no-wrap">
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<div class="col">
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<div class="text-subtitle2">Quick Test (Subset Processing)</div>
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<div class="text-caption">Process only the first N spectra to quickly test parameters.</div>
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</div>
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<div class="col-auto">
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<q-toggle v-model="enable_subset_processing" color="primary" :disable="is_processing" />
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</div>
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</div>
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<div v-if="enable_subset_processing" class="q-mt-sm">
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<q-input standout="custom-standout" type="number" v-model.number="spectra_subset_size" label="Number of Spectra to Process" :min="1" :readonly="is_processing">
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<template v-slot:prepend>
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<q-icon name="functions" />
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</template>
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</q-input>
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</div>
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</q-card-section>
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</q-card>
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<p>{{msg}}</p>
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<!-- Spectrum Selection for Visualization -->
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<div class="row items-center q-mb-md">
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<div class="text-subtitle2 q-mr-md">Preview Spectrum:</div>
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<q-btn-dropdown class="q-ma-sm" :loading="is_processing" :disable="is_processing"
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label="Generate Spectra" icon="play_arrow">
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<q-list>
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<q-item clickable v-close-popup v-on:click="createMeanPlot=true">
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<q-item-label>Mean spectrum plot</q-item-label>
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</q-item>
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<q-item clickable v-close-popup v-on:click="createSumPlot=true">
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<q-item-label>Sum Spectrum plot</q-item-label>
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</q-item>
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<q-item clickable v-close-popup v-on:click="createXYPlot=true">
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<q-item-label>Spectrum plot (X,Y)</q-item-label>
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</q-item>
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<q-item clickable v-close-popup v-on:click="createNSpectrumPlot=true">
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<q-item-section>
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<q-item-label>Spectrum plot (ID)</q-item-label>
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</q-item-section>
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</q-item>
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</q-list>
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</q-btn-dropdown>
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<div class="row col-6">
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<div class="st-col col-3 col-sm-3 q-ma-sm">
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<q-input standout="custom-standout" step="1" v-model="idSpectrum" label="Spectrum ID" type="number"
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hint="Not for Mean/Sum plots." :readonly="is_processing"></q-input>
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</div>
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<div class="st-col col-3 col-sm-3 q-ma-sm">
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<q-input standout="custom-standout" step="1" v-model="xCoord" label="X coord" type="number" :rules="[
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val => !SpectraEnabled ? ( val >= 0 || 'Needs to be bigger than 0') : true
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]" :readonly="is_processing"></q-input>
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</div>
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<div class="st-col col-3 col-sm-3 q-ma-sm">
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<q-input standout="custom-standout" step="1" v-model="yCoord" label="Y coord" type="number" :rules="[
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val => !SpectraEnabled ? ( val >= 0 || 'Needs to be bigger than 0') : true
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]" :readonly="is_processing"></q-input>
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</div>
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</div>
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</div>
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<!-- Internal Standards (Collapsible) -->
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<q-expansion-item
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icon="science"
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label="Internal Standards"
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caption="Manage reference peaks for calibration"
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class="q-mb-md"
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>
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<q-card>
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<q-card-section>
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<q-toggle v-model="enable_standards" v-on:click="enable_standards" label="Use Internal Standards" color="primary" class="q-mb-md" :disable="is_processing" />
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<!-- Keep your existing reference_peaks_list implementation -->
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<q-list bordered separator class="q-mt-md">
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<q-item v-for="(peak, index) in reference_peaks_list" :key="index">
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<q-item-section avatar>
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<q-btn flat round icon="delete" color="negative" v-on:click="action_index = index; remove_peak_trigger = true" :disable="is_processing"></q-btn>
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</q-item-section>
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<q-item-section>
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<div class="row q-col-gutter-sm">
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<div class="col-6">
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<q-input standout="custom-standout" label="m/z" type="number" step="0.0001"
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v-model="peak.mz" :rules="[val => !!val || 'Required', val => val > 0 || 'Must be positive']" :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Label (optional)" v-model="peak.label" :readonly="is_processing"></q-input>
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</div>
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</div>
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</q-item-section>
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</q-item>
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<q-item>
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<q-item-section>
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<q-btn class="q-ma-sm btn-style" icon="add" label="Add Reference Peak" v-on:click="addReferencePeak=true" :disable="is_processing"></q-btn>
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</q-item-section>
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</q-item>
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</q-list>
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<div class="row justify-end q-mt-sm">
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<q-btn class="q-ma-sm" dense icon="get_app" v-on:click="export_standards_btn=true" label="Export" outline :disable="is_processing" hint="Export standards list to a JSON file." />
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<q-btn class="q-ma-sm" dense icon="upload_file" v-on:click="import_standards_btn=true" label="Import" outline :disable="is_processing" hint="Import standards list from a JSON file." />
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<q-btn class="q-ma-sm" icon="functions" v-on:click="recalculate_suggestions_btn=true" label="Recalculate Suggestions" outline hint="Re-run automatic parameter suggestion using the current list of internal standards." :disable="is_processing"/>
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</div>
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</q-card-section>
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</q-card>
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</q-expansion-item>
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<!-- Reorderable Preprocessing Steps -->
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<div class="text-h6 q-mb-md">Preprocessing Pipeline</div>
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<q-list bordered :disable="is_processing">
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<q-expansion-item v-for="(step, index) in pipeline_step_order" :key="step.name"
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:label="step.label" group="preprocessing-steps"
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:class="step.enabled ? '' : 'text-grey'" :disable="is_processing">
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<!-- Header with controls -->
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<template v-slot:header>
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<q-item-section avatar>
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<div class="row no-wrap">
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<q-btn flat round icon="arrow_upward" size="sm"
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:disable="is_processing || index === 0" v-on:click.stop="action_index = index; move_step_up_trigger = true"></q-btn>
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<q-btn flat round icon="arrow_downward" size="sm"
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:disable="is_processing || index === pipeline_step_order.length - 1" v-on:click.stop="action_index = index; move_step_down_trigger = true"></q-btn>
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</div>
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</q-item-section>
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<q-item-section>
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{{ step.label }}
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</q-item-section>
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<q-item-section side>
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<q-toggle v-model="step.enabled" color="green" v-on:click.stop="action_index = index; toggle_step_trigger = true" :disable="is_processing" />
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</q-item-section>
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</template>
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<!-- Step-specific parameters -->
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<q-card v-if="step.name === 'stabilization'">
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<q-card-section>
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<q-radio v-model="stabilization_method" val="sqrt" label="SQRT" :disable="is_processing" />
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<q-radio v-model="stabilization_method" val="log" label="LOG" :disable="is_processing" />
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<q-radio v-model="stabilization_method" val="log2" label="LOG 2" :disable="is_processing" />
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<q-radio v-model="stabilization_method" val="log10" label="LOG 10" :disable="is_processing" />
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<q-radio v-model="stabilization_method" val="log1p" label="LOG 1P" :disable="is_processing" />
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</q-card-section>
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</q-card>
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<q-card v-if="step.name === 'smoothing'">
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<q-card-section>
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<q-radio v-model="smoothing_method" val="sg" label="Savitzky-Golay" :disable="is_processing" />
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<q-radio v-model="smoothing_method" val="ma" label="Moving Average" :disable="is_processing" />
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<div class="row q-col-gutter-sm q-mt-md">
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<div class="col-6">
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<q-input standout="custom-standout" label="Window Size" v-model="smoothing_window" type="number" :readonly="is_processing" />
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Order (Savitzky-Golay)" v-model="smoothing_order" type="number" :readonly="is_processing" />
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</div>
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</div>
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</q-card-section>
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</q-card>
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<q-card v-if="step.name === 'baseline_correction'">
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<q-card-section>
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<div class="text-h6">Method</div>
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<div class="text-caption">The algorithm to use for baseline correction.</div>
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</q-card-section>
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<q-card-section>
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<q-radio v-model="baseline_method" val="snip" label="SNIP" hint="Sensitive Nonlinear Iterative Peak clipping." :disable="is_processing" /><br>
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<q-radio v-model="baseline_method" val="convex_hull" label="CONVEX HULL" hint="Finds the lower convex hull of the spectrum." :disable="is_processing" /><br>
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<q-radio v-model="baseline_method" val="median" label="MEDIAN" hint="Moving median filter." :disable="is_processing" /><br>
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</q-card-section>
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<q-card-section>
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<div class="text-h6">Parameters</div>
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</q-card-section>
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<q-card-section>
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<div class="row q-col-gutter-sm">
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<div class="col-6">
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<q-input standout="custom-standout" label="Iterations (for SNIP)" type="number"
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:placeholder="suggested_baseline_iterations" v-model="baseline_iterations" hint="The number of iterations for the SNIP algorithm. A higher number results in a more aggressive baseline." :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Window (for Median)" type="number"
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:placeholder="suggested_baseline_window" v-model="baseline_window" hint="The window size for the median method, determining the local region for median calculation." :readonly="is_processing"></q-input>
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</div>
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</div>
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</q-card-section>
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</q-card>
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<q-card v-if="step.name === 'normalization'">
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<q-card-section>
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<div class="text-h6">Method</div>
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<div class="text-caption">The normalization method to apply.</div>
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</q-card-section>
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<q-card-section>
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<q-radio v-model="normalization_method" val="tic" label="TIC" hint="Total Ion Current normalization (divides by the sum of intensities)." :disable="is_processing" /><br>
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<q-radio v-model="normalization_method" val="median" label="MEDIAN" hint="Divides by the median intensity." :disable="is_processing" /><br>
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<q-radio v-model="normalization_method" val="rms" label="RMS" hint="Root Mean Square normalization." :disable="is_processing" /><br>
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<q-radio v-model="normalization_method" val="none" label="NONE" hint="No normalization is applied." :disable="is_processing" /><br>
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</q-card-section>
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</q-card>
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<q-card v-if="step.name === 'peak_alignment'">
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<q-card-section>
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<div class="text-h6">Method</div>
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<div class="text-caption">The alignment algorithm.</div>
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</q-card-section>
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<q-card-section>
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<q-radio v-model="alignment_method" val="lowess" label="LOWESS" hint="Locally Weighted Scatterplot Smoothing regression." :disable="is_processing" /><br>
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<q-radio v-model="alignment_method" val="linear" label="LINEAR" hint="Linear regression." :disable="is_processing" /><br>
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<q-radio v-model="alignment_method" val="ransac" label="RANSAC" hint="Random Sample Consensus algorithm for robust fitting." :disable="is_processing" /><br>
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</q-card-section>
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<q-card-section>
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<div class="text-h6">Parameters</div>
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</q-card-section>
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<q-card-section>
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<div class="row q-col-gutter-sm">
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<div class="col-6">
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<q-input standout="custom-standout" label="Span (for LOWESS)" type="number" step="0.01"
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:placeholder="suggested_alignment_span" v-model="alignment_span" :rules="[val => val >= 0.0 && val <= 1.0 || 'Needs to be between 0 and 1']" hint="The span parameter for LOWESS regression, controlling smoothness (0.0 to 1.0)." :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Tolerance" type="number" step="0.001"
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:placeholder="suggested_alignment_tolerance" v-model="alignment_tolerance" hint="The tolerance for matching peaks between the target and reference spectrum." :readonly="is_processing"></q-input>
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</div>
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</div>
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<q-select standout="custom-standout" label="Tolerance Unit" v-model="alignment_tolerance_unit"
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:options="['mz', 'ppm']" class="q-mt-md" hint="The unit for tolerance, either 'mz' (absolute) or 'ppm' (relative)." :disable="is_processing"></q-select>
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<div class="row q-col-gutter-sm q-mt-md">
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<div class="col-6">
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<q-input standout="custom-standout" label="Max Shift PPM" type="number"
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:placeholder="suggested_alignment_max_shift_ppm" v-model="alignment_max_shift_ppm" hint="The maximum allowed m/z shift in ppm to prevent spurious peak matches." :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Min Matched Peaks" type="number"
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:placeholder="suggested_alignment_min_matched_peaks" v-model="alignment_min_matched_peaks" hint="The minimum number of matching peaks required to perform the alignment." :readonly="is_processing"></q-input>
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</div>
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</div>
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</q-card-section>
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</q-card>
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<q-card v-if="step.name === 'calibration'">
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<q-card-section>
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<div class="text-h6">Parameters</div>
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</q-card-section>
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<q-card-section>
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<div class="row q-col-gutter-sm">
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<div class="col-6">
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<q-input standout="custom-standout" label="Fit Order" type="number"
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:placeholder="suggested_calibration_fit_order" v-model="calibration_fit_order"
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hint="Polynomial order for the calibration curve (e.g., 1 or 2)." :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="PPM Tolerance" type="number"
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:placeholder="suggested_calibration_ppm_tolerance" v-model="calibration_ppm_tolerance"
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hint="PPM tolerance for matching reference peaks to internal standards." :readonly="is_processing"></q-input>
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</div>
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</div>
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</q-card-section>
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</q-card>
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<q-card v-if="step.name === 'peak_picking'">
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<q-card-section>
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<div class="text-h6">Method</div>
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<div class="text-caption">The peak detection algorithm.</div>
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</q-card-section>
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<q-card-section>
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<q-radio v-model="peak_picking_method" val="profile" label="PROFILE" hint="For profile-mode data, using local maxima and quality filters." :disable="is_processing" /><br>
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<q-radio v-model="peak_picking_method" val="wavelet" label="WAVELET" hint="Continuous Wavelet Transform (CWT) based peak detection." :disable="is_processing" /><br>
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<q-radio v-model="peak_picking_method" val="centroid" label="CENTROID" hint="For centroid-mode data, essentially a filtering step." :disable="is_processing" /><br>
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</q-card-section>
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<q-card-section>
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<div class="text-h6">Parameters</div>
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</q-card-section>
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<q-card-section>
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<div class="row q-col-gutter-sm">
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<div class="col-6">
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<q-input standout="custom-standout" label="Signal to Noise Threshold" type="number" step="0.1"
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:placeholder="suggested_peak_picking_snr_threshold" v-model="peak_picking_snr_threshold" hint="Signal-to-Noise Ratio threshold. Peaks with SNR below this value are discarded." :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Half Window Size" type="number"
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:placeholder="suggested_peak_picking_half_window" v-model="peak_picking_half_window" hint="Number of data points to the left and right of a potential peak to consider for local maximum detection (for Profile method)." :readonly="is_processing"></q-input>
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</div>
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</div>
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<div class="row q-col-gutter-sm q-mt-md">
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<div class="col-6">
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<q-input standout="custom-standout" label="Min Peak Prominence" type="number" step="0.01"
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:placeholder="suggested_peak_picking_min_peak_prominence" v-model="peak_picking_min_peak_prominence" hint="Minimum required prominence of a peak, expressed as a fraction of its height." :readonly="is_processing"></q-input>
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</div>
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<div class="col-6">
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<q-input standout="custom-standout" label="Merge Peaks Tolerance (m/z)" type="number" step="0.001"
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:placeholder="suggested_peak_picking_merge_peaks_tolerance" v-model="peak_picking_merge_peaks_tolerance" hint="The m/z tolerance within which to merge adjacent peaks, keeping the more intense one." :readonly="is_processing"></q-input>
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</div>
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</div>
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<div class="row q-col-gutter-sm q-mt-md">
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<div class="col-6">
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<q-input standout="custom-standout" label="Min Peak Width (PPM)" type="number"
|
|
:placeholder="suggested_peak_picking_min_peak_width_ppm" v-model="peak_picking_min_peak_width_ppm" hint="Minimum acceptable peak width (FWHM) in ppm." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Max Peak Width (PPM)" type="number"
|
|
:placeholder="suggested_peak_picking_max_peak_width_ppm" v-model="peak_picking_max_peak_width_ppm" hint="Maximum acceptable peak width (FWHM) in ppm." :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
<q-input standout="custom-standout" label="Min Peak Shape R2" type="number" step="0.01" class="q-mt-md"
|
|
:placeholder="suggested_peak_picking_min_peak_shape_r2" v-model="peak_picking_min_peak_shape_r2" hint="Minimum R-squared value from a Gaussian fit to the peak, used as a quality measure for peak shape." :readonly="is_processing"></q-input>
|
|
</q-card-section>
|
|
</q-card>
|
|
|
|
<q-card v-if="step.name === 'peak_selection'">
|
|
<q-card-section>
|
|
<div class="text-h6">Peak Quality Filters</div>
|
|
</q-card-section>
|
|
<q-card-section>
|
|
<div class="row q-col-gutter-sm">
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Min SNR" type="number" step="0.1"
|
|
:placeholder="suggested_peak_selection_min_snr" v-model="peak_selection_min_snr" hint="Minimum Signal-to-Noise Ratio for a peak to be kept." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Min FWHM (PPM)" type="number"
|
|
:placeholder="suggested_peak_selection_min_fwhm_ppm" v-model="peak_selection_min_fwhm_ppm" hint="Minimum Full Width at Half Maximum (FWHM) in ppm for a peak to be kept." :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
<div class="row q-col-gutter-sm q-mt-md">
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Max FWHM (PPM)" type="number"
|
|
:placeholder="suggested_peak_selection_max_fwhm_ppm" v-model="peak_selection_max_fwhm_ppm" hint="Maximum Full Width at Half Maximum (FWHM) in ppm for a peak to be kept." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Min Peak Shape R2" type="number" step="0.01"
|
|
:placeholder="suggested_peak_selection_min_shape_r2" v-model="peak_selection_min_shape_r2" hint="Minimum R-squared value from a Gaussian fit, filtering for good peak shape." :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
<div class="row q-col-gutter-sm q-mt-md">
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Frequency Threshold" type="number" step="0.01"
|
|
:placeholder="suggested_peak_selection_frequency_threshold" v-model="peak_selection_frequency_threshold"
|
|
hint="The minimum fraction of spectra a peak must be present in to be kept (0.0 to 1.0)." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Correlation Threshold" type="number" step="0.01"
|
|
:placeholder="suggested_peak_selection_correlation_threshold" v-model="peak_selection_correlation_threshold"
|
|
hint="Minimum correlation with neighboring peaks (not yet implemented)." :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
</q-card-section>
|
|
</q-card>
|
|
|
|
<q-card v-if="step.name === 'peak_binning'">
|
|
<q-card-section>
|
|
<div class="text-h6">Method</div>
|
|
<div class="text-caption">The binning strategy.</div>
|
|
</q-card-section>
|
|
<q-card-section>
|
|
<q-radio v-model="binning_method" val="adaptive" label="ADAPTIVE" hint="Creates bins based on the density of detected peaks." :disable="is_processing" /><br>
|
|
<q-radio v-model="binning_method" val="uniform" label="UNIFORM" hint="Creates a fixed number of equally spaced bins over the m/z range." :disable="is_processing" /><br>
|
|
</q-card-section>
|
|
<q-card-section>
|
|
<div class="text-h6">Parameters</div>
|
|
</q-card-section>
|
|
<q-card-section>
|
|
<div class="row q-col-gutter-sm">
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Tolerance (for Adaptive)" type="number" step="0.001"
|
|
:placeholder="suggested_binning_tolerance" v-model="binning_tolerance" hint="Tolerance for grouping peaks into a bin in adaptive mode." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-select standout="custom-standout" label="Tolerance Unit" v-model="binning_tolerance_unit"
|
|
:options="['mz', 'ppm']" hint="The unit for tolerance, either 'mz' (absolute) or 'ppm' (relative)." :disable="is_processing"></q-select>
|
|
</div>
|
|
</div>
|
|
<div class="row q-col-gutter-sm q-mt-md">
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Frequency Threshold" type="number" step="0.01"
|
|
:placeholder="suggested_binning_frequency_threshold" v-model="binning_frequency_threshold" hint="The minimum fraction of spectra a bin must contain a peak in to be kept (0.0 to 1.0)." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Min Peaks Per Bin" type="number"
|
|
:placeholder="suggested_binning_min_peak_per_bin" v-model="binning_min_peak_per_bin" hint="The minimum number of individual peaks required to form a bin in adaptive mode." :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
<div class="row q-col-gutter-sm q-mt-md">
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Max Bin Width (PPM)" type="number"
|
|
:placeholder="suggested_binning_max_bin_width_ppm" v-model="binning_max_bin_width_ppm" hint="Maximum width of a bin in ppm for adaptive mode." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="col-6">
|
|
<q-input standout="custom-standout" label="Number of Uniform Bins" type="number"
|
|
:placeholder="suggested_binning_num_uniform_bins" v-model="binning_num_uniform_bins" hint="The number of bins to create for the uniform method." :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
<q-toggle v-model="binning_intensity_weighted_centers" v-on:click="binning_intensity_weighted_centers" label="Intensity Weighted Centers"
|
|
class="q-mt-md" hint="If enabled, calculates bin centers as an intensity-weighted average of the peaks within it." :disable="is_processing"></q-toggle>
|
|
</q-card-section>
|
|
</q-card>
|
|
|
|
</q-expansion-item>
|
|
</q-list>
|
|
|
|
<!-- Pipeline Controls -->
|
|
<div class="row justify-end items-center q-mt-md">
|
|
<q-btn class="q-ma-sm" icon="get_app" v-on:click="export_params_btn=true" label="Export Params" outline :disable="is_processing" />
|
|
<q-btn class="q-ma-sm" icon="upload_file" v-on:click="import_params_btn=true" label="Import Params" outline :disable="is_processing" />
|
|
<q-btn :loading="is_processing" class="q-ma-sm btn-style" icon="play_arrow"
|
|
v-on:click="run_full_pipeline=true" padding="lg" label="Run Pipeline" :disable="is_processing" />
|
|
</div>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="generator">
|
|
<div class="text-h6">imzML & mzML Data Processor</div>
|
|
<p>Please make sure the ibd and imzML file are located in the same directory and have the same name.
|
|
<br>It may take a while to generate the slice / spectrum, please be patient.
|
|
<br>To generate the contour or surface plots, you have to select the desired slice first using the
|
|
interface.
|
|
</p>
|
|
<div class="row items-center">
|
|
<q-input standout="custom-standout" class="q-ma-sm cursor-pointer col" v-model="full_route" readonly
|
|
:label="batch_file_count > 0 ? batch_file_count + ' file(s) in batch' : 'Select an imzMl / mzML file'"
|
|
v-on:click="btnSearch=true" :disable="is_processing">
|
|
<template v-slot:append>
|
|
<q-icon name="search" v-on:click="btnSearch=true" class="cursor-pointer" :disable="is_processing" />
|
|
</template>
|
|
</q-input>
|
|
<q-btn class="q-ma-sm" icon="add" v-on:click="btnAddBatch=true" label="Add" :disable="is_processing"></q-btn>
|
|
<q-btn class="q-ma-sm" icon="clear" v-on:click="clear_batch_btn=true" :disable="is_processing || batch_file_count === 0"
|
|
label="Clear"></q-btn>
|
|
</div>
|
|
<q-list bordered separator v-if="selected_files.length > 0">
|
|
<q-item v-for="(file, index) in selected_files" :key="index">
|
|
<q-item-section>
|
|
{{ file }}
|
|
</q-item-section>
|
|
<q-item-section side>
|
|
<q-btn flat round icon="delete" size="sm" v-on:click="selected_files.splice(index, 1)" :disable="is_processing"></q-btn>
|
|
</q-item-section>
|
|
</q-item>
|
|
</q-list>
|
|
|
|
<!-- Variable Manipulation -->
|
|
<div class="row">
|
|
<div class="st-col col-4 col-sm q-ma-sm">
|
|
<q-input standout="custom-standout" id="textNmass" v-model="Nmass"
|
|
label="Mass-to-charge ratio(s) of interest" type="text" :rules="[
|
|
val => !!val || '* Required',
|
|
val => val.split(',').every(m => !isNaN(parseFloat(m.trim())) && parseFloat(m.trim()) > 0) || 'Need comma-separated positive numbers'
|
|
]" :readonly="is_processing">
|
|
</q-input>
|
|
</div>
|
|
<div class="st-col col-4 col-sm q-ma-sm">
|
|
<q-input standout="custom-standout" id="textTol" step="0.005" v-model="Tol"
|
|
label="Mass-to-charge ratio tolerance" type="number"
|
|
:rules="[val => !!val || '* Required', val => val >= 0.0 && val <= 1.0 || 'Needs to be in range between 0 and 1']" :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="st-col col-4 col-sm q-ma-sm">
|
|
<q-input standout="custom-standout" id="textcolorLevel" step="1" v-model="colorLevel" label="Color levels"
|
|
type="number"
|
|
:rules="[ val => !!val || '* Required', val => val >= 2 && val <= 256 || 'Needs to be in range between 2 and 256']" :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
<div class="row">
|
|
<!-- Triq Variable Manipulation and filters-->
|
|
<div class="col-6">
|
|
<div class="st-col col-6 col-sm q-ma-sm">
|
|
<q-toggle id="btnEnableMFilter" v-on:click="MFilterEnabled" v-model="MFilterEnabled" color="green"
|
|
label="Add Median Filter" :disable="is_processing"></q-toggle>
|
|
<q-toggle id="btnEnableTriq" v-on:click="triqEnabled" v-model="triqEnabled" color="blue"
|
|
label="Add Threshold Intensity Quantization (TrIQ)" :disable="is_processing"></q-toggle>
|
|
<q-toggle id="btnEnableMask" v-on:click="maskEnabled" v-model="maskEnabled" color="black"
|
|
label="Use Mask To Filter Data" :disable="is_processing"></q-toggle>
|
|
</div>
|
|
<div class="row">
|
|
<div class="st-col col-4 col-sm-4 q-ma-sm">
|
|
<q-input standout="custom-standout" id="textTriqProb" step="0.01" v-model="triqProb"
|
|
label="TrIQ probability" type="number" :rules="[
|
|
val => triqEnabled ? ( '* Required', val >= 0.8 && val <= 1 || 'Needs to be in range between 0.8 and 1') : true
|
|
]" :readonly="is_processing || !triqEnabled" :disable="is_processing || !triqEnabled"></q-input>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<!-- Spectra Plot Manipulation -->
|
|
<div class="col-6">
|
|
<div class="st-col col-6 col-sm">
|
|
<q-btn-dropdown class="q-ma-sm btn-style" :loading="is_processing" :disable="is_processing"
|
|
label="Generate Spectra" icon="play_arrow">
|
|
<template v-slot:loading>
|
|
<q-spinner-hourglass class="on-left" />
|
|
Loading plot
|
|
</template>
|
|
|
|
<q-list>
|
|
<q-item clickable v-close-popup v-on:click="createMeanPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Mean spectrum plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="createSumPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Sum Spectrum plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="createXYPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Spectrum plot (X,Y)</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="createNSpectrumPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Spectrum plot (ID)</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
</q-list>
|
|
</q-btn-dropdown>
|
|
</div>
|
|
<div class="row col-6">
|
|
<div class="st-col col-4 col-sm-4 q-ma-sm">
|
|
<q-input standout="custom-standout" step="1" v-model="idSpectrum" label="Spectrum ID" type="number"
|
|
hint="Not for Mean/Sum plots." :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="st-col col-4 col-sm-4 q-ma-sm">
|
|
<q-input standout="custom-standout" step="1" v-model="xCoord" label="X coord" type="number" :rules="[
|
|
val => SpectraEnabled ? ( '* Required', val >= 0|| 'Needs to be bigger than 0') : true
|
|
]" :readonly="is_processing"></q-input>
|
|
</div>
|
|
<div class="st-col col-4 col-sm-4 q-ma-sm">
|
|
<q-input standout="custom-standout" step="1" v-model="yCoord" label="Y coord" type="number" :rules="[
|
|
val => SpectraEnabled ? ( '* Required', val <= 0|| 'Needs to be lower than 0') : true
|
|
]" :readonly="is_processing"></q-input>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
<div class="row">
|
|
<q-btn :loading="is_processing" class="q-ma-sm btn-style" :disable="is_processing" icon="play_arrow"
|
|
v-on:click="mainProcess=true" padding="lg" label="Generate Slice">
|
|
<template v-slot:loading>
|
|
<q-spinner-hourglass class="on-left" />
|
|
Loading...
|
|
</template>
|
|
</q-btn>
|
|
<q-btn icon="zoom_out_map" class="q-ma-sm on-right btn-style" v-on:click="compareBtn=true" padding="sm"
|
|
label="Compare" :disable="is_processing"></q-btn>
|
|
<q-btn class="q-ma-sm btn-style" icon="edit" label="Mask Editor" href="/mask" :disable="is_processing"></q-btn>
|
|
<q-btn class="q-ma-sm btn-style" icon="dashboard" v-on:click="showMetadataBtn=true"
|
|
label="Show Metadata" :disable="is_processing"></q-btn>
|
|
<div class="q-pa-md row items-center" v-show="is_processing">
|
|
<q-spinner color="primary" size="2em" class="q-mr-sm"></q-spinner>
|
|
<div class="text-caption">{{ progress_message }}</div>
|
|
</div>
|
|
</div>
|
|
<p>{{msg}}</p>
|
|
<div class="row st-col col-12">
|
|
<q-btn-dropdown class="q-ma-sm btn-style" :loading="is_processing" :disable="is_processing"
|
|
label="Generate Plots" icon="play_arrow">
|
|
<template v-slot:loading>
|
|
<q-spinner-hourglass class="on-left" />
|
|
Loading plot
|
|
</template>
|
|
|
|
<q-list>
|
|
<q-item clickable v-close-popup v-on:click="imageCPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Image topography Plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
|
|
<q-item clickable v-close-popup v-on:click="triqCPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>TrIQ topography Plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
|
|
<q-item clickable v-close-popup v-on:click="image3dPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Image surface Plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
|
|
<q-item clickable v-close-popup v-on:click="triq3dPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>TrIQ Surface Plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
</q-list>
|
|
</q-btn-dropdown>
|
|
<q-btn-dropdown icon="search" class="q-ma-sm btn-style" :disable="is_processing"
|
|
label="Load your optical image">
|
|
<q-item clickable v-close-popup v-on:click="btnOptical=true">
|
|
<q-item-section>
|
|
<q-item-label>Over normal image</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="btnOpticalT=true">
|
|
<q-item-section>
|
|
<q-item-label>Over TrIQ image</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
</q-btn-dropdown>
|
|
<div class="q-mx-sm">
|
|
<q-slider color="black" v-model="imgTrans" :min="0.0" :max="1" :step="0.1" :disable="is_processing" />
|
|
<q-badge style="background-color: #009f90;"> Transparency: {{ imgTrans }}</q-badge>
|
|
</div>
|
|
</div>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="converter">
|
|
<div class="text-h6">mzML to imzML Converter</div>
|
|
<p>Select the .mzML file and the corresponding .txt synchronization file to convert them into an .imzML/.ibd
|
|
pair.</p>
|
|
<q-input standout="custom-standout" class="q-ma-sm cursor-pointer" v-model="mzml_full_route" readonly
|
|
label="Select your .mzML file" v-on:click="btnSearchMzml=true" :disable="is_processing">
|
|
<template v-slot:append>
|
|
<q-icon name="search" v-on:click="btnSearchMzml=true" class="cursor-pointer" :disable="is_processing" />
|
|
</template>
|
|
</q-input>
|
|
|
|
<q-input standout="custom-standout" class="q-ma-sm cursor-pointer" v-model="sync_full_route" readonly
|
|
label="Select your .txt sync file" v-on:click="btnSearchSync=true" :disable="is_processing">
|
|
<template v-slot:append>
|
|
<q-icon name="search" v-on:click="btnSearchSync=true" class="cursor-pointer" :disable="is_processing" />
|
|
</template>
|
|
</q-input>
|
|
|
|
<q-btn :loading="is_processing" class="q-ma-sm btn-style" :disable="is_processing || btnConvertDisable"
|
|
icon="swap_horiz" v-on:click="convert_process=true" padding="lg" label="Convert File">
|
|
<template v-slot:loading>
|
|
<q-spinner-hourglass class="on-left" />
|
|
Converting...
|
|
</template>
|
|
</q-btn>
|
|
<p>{{msg_conversion}}</p>
|
|
</q-tab-panel>
|
|
</q-tab-panels>
|
|
</div>
|
|
</div>
|
|
<div class="row col-6">
|
|
<!-- Right DIV -->
|
|
<div id="intDivStyle-right" class="st-col col-12 col-sm st-module">
|
|
<div v-if="left_tab === 'pre_treatment'">
|
|
<div class="text-h6 q-mb-md">Spectrum View</div>
|
|
<q-card class="q-mb-md">
|
|
<q-card-section>
|
|
<div class="text-subtitle1">Before Preprocessing</div>
|
|
</q-card-section>
|
|
<q-card-section>
|
|
<plotly id="plotSpectraBefore" :data="plotdata_before" :layout="plotlayout_before" class="q-pa-none q-ma-none"></plotly>
|
|
</q-card-section>
|
|
</q-card>
|
|
<q-card>
|
|
<q-card-section>
|
|
<div class="text-subtitle1">After Preprocessing</div>
|
|
</q-card-section>
|
|
<q-card-section>
|
|
<plotly id="plotSpectraAfter" :data="plotdata_after" :layout="plotlayout_after" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-card-section>
|
|
</q-card>
|
|
</div>
|
|
<div v-else>
|
|
<st-tabs id="tabHeader-main" :ids="tabIDs" :labels="tabLabels" v-model="selectedTab" no-arrows></st-tabs>
|
|
<q-tab-panels v-model="selectedTab">
|
|
<q-tab-panel name="tab0">
|
|
<!-- Content for Tab 0 -->
|
|
<h6>Image visualizer</h6>
|
|
<div class="row items-center">
|
|
<q-select v-model="selected_folder_main" :options="image_available_folders" label="Select Dataset"
|
|
class="q-ma-sm" style="min-width: 200px;" v-on:focus="refetch_folders = true" :disable="is_processing"></q-select>
|
|
<q-space></q-space>
|
|
<q-btn icon="arrow_back" class="q-my-sm btn-style" v-on:click="imgMinus=true" :disable="is_processing"></q-btn>
|
|
<q-btn icon="arrow_forward" class="q-my-sm on-right btn-style" v-on:click="imgPlus=true" :disable="is_processing"></q-btn>
|
|
</div>
|
|
<!-- Image manager -->
|
|
<div id="image-container-normal" class="row st-col col-12">
|
|
<div class="col-10 q-pa-none q-ma-none">
|
|
<plotly id="plotImg" :data="plotdataImg" :layout="plotlayoutImg" class="q-pa-none q-ma-none sync_data"
|
|
v-on:click="data_click"></plotly>
|
|
</div>
|
|
<div class="col-2 q-pa-none q-ma-none">
|
|
<q-img id="colorbar-normal" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
|
|
</div>
|
|
</div>
|
|
<p v-html="msgimg"></p>
|
|
</q-tab-panel>
|
|
|
|
<q-tab-panel name="tab1">
|
|
<!-- Content for Tab 1 -->
|
|
<h6>TrIQ visualizer</h6>
|
|
<div class="row items-center">
|
|
<q-select v-model="selected_folder_main" :options="image_available_folders" label="Select Dataset"
|
|
class="q-ma-sm" style="min-width: 200px;" v-on:focus="refetch_folders = true" :disable="is_processing"></q-select>
|
|
<q-space></q-space>
|
|
<q-btn icon="arrow_back" class="q-my-sm btn-style" v-on:click="imgMinusT=true" :disable="is_processing"></q-btn>
|
|
<q-btn icon="arrow_forward" class="q-my-sm on-right btn-style" v-on:click="imgPlusT=true" :disable="is_processing"></q-btn>
|
|
</div>
|
|
<!-- Triq Image manager -->
|
|
<div id="image-container-triq" class="row st-col col-12">
|
|
<div class="col-10 q-pa-none q-ma-none ">
|
|
<plotly id="plotImgT" :data="plotdataImgT" :layout="plotlayoutImgT"
|
|
class="q-pa-none q-ma-none sync_data" v-on:click="data_click"></plotly>
|
|
</div>
|
|
<div class="col-2 q-pa-none q-ma-none ">
|
|
<q-img id="colorbar-triq" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
|
|
</div>
|
|
</div>
|
|
<p v-html="msgtriq"></p>
|
|
</q-tab-panel>
|
|
|
|
<q-tab-panel name="tab2">
|
|
<div class="row items-center">
|
|
<q-select v-model="selected_folder_main" :options="available_folders" label="Select Dataset"
|
|
class="q-ma-sm" style="min-width: 200px;" v-on:focus="refetch_folders = true" :disable="is_processing"></q-select>
|
|
<q-btn-dropdown class="q-ma-sm btn-style" :loading="is_processing" :disable="is_processing"
|
|
label="Generate Spectra" icon="play_arrow">
|
|
<template v-slot:loading>
|
|
<q-spinner-hourglass class="on-left" />
|
|
Loading plot
|
|
</template>
|
|
|
|
<q-list>
|
|
<q-item clickable v-close-popup v-on:click="createMeanPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Mean spectrum plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="createSumPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Sum Spectrum plot</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="createXYPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Spectrum plot (X,Y)</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
<q-item clickable v-close-popup v-on:click="createNSpectrumPlot=true">
|
|
<q-item-section>
|
|
<q-item-label>Spectrum plot (ID)</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
</q-list>
|
|
</q-btn-dropdown>
|
|
</div>
|
|
<plotly id="plotSpectra" :data="plotdata" :layout="plotlayout" class="q-pa-none q-ma-none"></plotly>
|
|
</q-tab-panel>
|
|
|
|
<q-tab-panel name="tab3">
|
|
<!-- Content for Tab 3 -->
|
|
<plotly id="plotTopo" :data="plotdataC" :layout="plotlayoutC" class="q-pa-none q-ma-none"></plotly>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab4">
|
|
<!-- Content for Tab 4 -->
|
|
<plotly id="plot3d" :data="plotdata3d" :layout="plotlayout3d" class="q-pa-none q-ma-none"></plotly>
|
|
</q-tab-panel>
|
|
</q-tab-panels>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
</div>
|
|
|
|
<q-dialog v-model="warning_msg">
|
|
<q-card>
|
|
<q-card-section>
|
|
<div class="text-h6">Warning</div>
|
|
</q-card-section>
|
|
|
|
<q-card-section class="q-pt-none">
|
|
{{msg}}
|
|
</q-card-section>
|
|
|
|
<q-card-actions align="right">
|
|
<q-btn flat label="Ok" style="color:#009f90" v-close-popup />
|
|
</q-card-actions>
|
|
</q-card>
|
|
</q-dialog>
|
|
|
|
<q-dialog v-model="CompareDialog" full-width>
|
|
<q-card>
|
|
<q-card-section class="row items-center">
|
|
<div class="text-h6 q-ma-sm">Compare two different images or plots</div>
|
|
<div class="q-mx-sm">
|
|
<q-slider color="black" v-model="imgTrans" :min="0.0" :max="1" :step="0.1" :disable="is_processing" />
|
|
<q-badge style="background-color: #009f90;"> Transparency: {{ imgTrans }}</q-badge>
|
|
</div>
|
|
<q-toggle id="btnOpticalOver" v-on:click="opticalOverTriq" v-model="opticalOverTriq" color="black"
|
|
label="Optical over TrIQ" :disable="is_processing"></q-toggle>
|
|
</q-card-section>
|
|
|
|
<q-card-section class="q-pt-none col-12">
|
|
<div class="row">
|
|
<div class="col-6">
|
|
<div class="row items-center">
|
|
<q-select v-model="selected_folder_compare_left" :options="image_available_folders"
|
|
label="Select Left Dataset" class="q-ma-sm" style="min-width: 200px;"
|
|
v-on:focus="refetch_folders = true" :disable="is_processing"></q-select>
|
|
<q-space></q-space>
|
|
<st-tabs id="tabHeaderCompareLeft" :ids="CompTabIDsLeft" :labels="CompTabLabelsLeft"
|
|
v-model="CompSelectedTabLeft"></st-tabs>
|
|
</div>
|
|
<q-tab-panels v-model="CompSelectedTabLeft">
|
|
<q-tab-panel name="tab0">
|
|
<!-- Content for Tab 0 -->
|
|
<!-- Btn image changer -->
|
|
<div>
|
|
<q-btn icon="arrow_back" class="q-my-sm btn-style" v-on:click="imgMinusCompLeft=true" :disable="is_processing"></q-btn>
|
|
<q-btn icon="arrow_forward" class="q-my-sm on-right btn-style"
|
|
v-on:click="imgPlusCompLeft=true" :disable="is_processing"></q-btn>
|
|
</div>
|
|
<!-- Image manager -->
|
|
<div id="image-container-compare-left-normal" class="row st-col col-12">
|
|
<div class="col-10 q-pa-none q-ma-none ">
|
|
<plotly id="plotImgCompareLeft" :data="plotdataImgCompLeft" :layout="plotlayoutImgCompLeft"
|
|
class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</div>
|
|
<div class="col-2">
|
|
<q-img id="colorbarCompareLeft" class="q-ma-none q-pa-none" :src="colorbarCompLeft"></q-img>
|
|
</div>
|
|
</div>
|
|
<p v-html="msgimgCompLeft"></p>
|
|
</q-tab-panel>
|
|
|
|
<q-tab-panel name="tab1">
|
|
<!-- Content for Tab 1 -->
|
|
<!-- Triq Btn image changer -->
|
|
<div>
|
|
<q-btn icon="arrow_back" class="q-my-sm btn-style" v-on:click="imgMinusTCompLeft=true" :disable="is_processing"></q-btn>
|
|
<q-btn icon="arrow_forward" class="q-my-sm on-right btn-style"
|
|
v-on:click="imgPlusTCompLeft=true" :disable="is_processing"></q-btn>
|
|
</div>
|
|
<!-- Triq Image manager -->
|
|
<div id="image-container-compare-left-triq" class="row st-col col-12">
|
|
<div class="col-10 q-pa-none q-ma-none ">
|
|
<plotly id="plotImgTCompareLeft" :data="plotdataImgTCompLeft" :layout="plotlayoutImgTCompLeft"
|
|
class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</div>
|
|
<div class="col-2">
|
|
<q-img id="colorbarTCompareLeft" class="q-ma-none q-pa-none" :src="colorbarTCompLeft"></q-img>
|
|
</div>
|
|
</div>
|
|
<p v-html="msgtriqCompLeft"></p>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab2">
|
|
<!-- Content for Tab 2 -->
|
|
<plotly id="plotSpectraCompareLeft" :data="plotdata" :layout="plotlayout" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab3">
|
|
<!-- Content for Tab 3 -->
|
|
<plotly id="plotTopoCompareLeft" :data="plotdataC" :layout="plotlayoutC" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab4">
|
|
<!-- Content for Tab 4 -->
|
|
<plotly id="plot3dCompareLeft" :data="plotdata3d" :layout="plotlayout3d" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-tab-panel>
|
|
</q-tab-panels>
|
|
</div>
|
|
<div class="col-6">
|
|
<div class="row items-center">
|
|
<q-select v-model="selected_folder_compare_right" :options="image_available_folders"
|
|
label="Select Right Dataset" class="q-ma-sm" style="min-width: 200px;"
|
|
v-on:focus="refetch_folders = true" :disable="is_processing"></q-select>
|
|
<q-space></q-space>
|
|
<st-tabs id="tabHeaderCompareRight" :ids="CompTabIDsRight" :labels="CompTabLabelsRight"
|
|
v-model="CompSelectedTabRight"></st-tabs>
|
|
</div>
|
|
<q-tab-panels v-model="CompSelectedTabRight">
|
|
<q-tab-panel name="tab0">
|
|
<!-- Content for Tab 0 -->
|
|
<!-- Btn image changer -->
|
|
<div>
|
|
<q-btn icon="arrow_back" class="q-my-sm btn-style" v-on:click="imgMinusCompRight=true" :disable="is_processing"></q-btn>
|
|
<q-btn icon="arrow_forward" class="q-my-sm on-right btn-style"
|
|
v-on:click="imgPlusCompRight=true" :disable="is_processing"></q-btn>
|
|
</div>
|
|
<!-- Image manager -->
|
|
<div id="image-container-compare-right-normal" class="row st-col col-12">
|
|
<div class="col-10 q-pa-none q-ma-none ">
|
|
<plotly id="plotImgCompareRight" :data="plotdataImgCompRight" :layout="plotlayoutImgCompRight"
|
|
class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</div>
|
|
<div class="col-2 q-pa-none q-ma-none ">
|
|
<q-img id="colorbarCompRight" class="q-ma-none q-pa-none" :src="colorbarCompRight"></q-img>
|
|
</div>
|
|
</div>
|
|
<p v-html="msgimgCompRight"></p>
|
|
</q-tab-panel>
|
|
|
|
<q-tab-panel name="tab1">
|
|
<!-- Content for Tab 1 -->
|
|
<!-- Triq Btn image changer -->
|
|
<div>
|
|
<q-btn icon="arrow_back" class="q-my-sm btn-style" v-on:click="imgMinusTCompRight=true" :disable="is_processing"></q-btn>
|
|
<q-btn icon="arrow_forward" class="q-my-sm on-right btn-style"
|
|
v-on:click="imgPlusTCompRight=true" :disable="is_processing"></q-btn>
|
|
</div>
|
|
<!-- Triq Image manager -->
|
|
<div id="image-container-compare-right-triq" class="row st-col col-12">
|
|
<div class="col-10 q-pa-none q-ma-none ">
|
|
<plotly id="plotImgTCompareRight" :data="plotdataImgTCompRight" :layout="plotlayoutImgTCompRight"
|
|
class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</div>
|
|
<div class="col-2 q-pa-none q-ma-none ">
|
|
<q-img id="colorbarTCompRight" class="q-ma-none q-pa-none" :src="colorbarTCompRight"></q-img>
|
|
</div>
|
|
</div>
|
|
<p v-html="msgtriqCompRight"></p>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab2">
|
|
<!-- Content for Tab 2 -->
|
|
<plotly id="plotSpectraCompareRight" :data="plotdata" :layout="plotlayout" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab3">
|
|
<!-- Content for Tab 3 -->
|
|
<plotly id="plotTopoCompareRight" :data="plotdataC" :layout="plotlayoutC" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-tab-panel>
|
|
<q-tab-panel name="tab4">
|
|
<!-- Content for Tab 4 -->
|
|
<plotly id="plot3dCompareRight" :data="plotdata3d" :layout="plotlayout3d" class="q-pa-none q-ma-none">
|
|
</plotly>
|
|
</q-tab-panel>
|
|
</q-tab-panels>
|
|
</div>
|
|
</div>
|
|
</q-card-section>
|
|
|
|
<q-card-actions align="right">
|
|
<q-btn flat label="Done" style="color:#009f90" v-close-popup />
|
|
</q-card-actions>
|
|
</q-card>
|
|
</q-dialog>
|
|
|
|
<q-dialog v-model="showBatchSummary">
|
|
<q-card>
|
|
<q-card-section>
|
|
<div class="text-h6">Batch Process Summary</div>
|
|
</q-card-section>
|
|
|
|
<q-card-section class="q-pt-none">
|
|
<pre>{{ batch_summary }}</pre>
|
|
</q-card-section>
|
|
|
|
<q-card-actions align="right">
|
|
<q-btn flat label="Ok" style="color:#009f90" v-close-popup />
|
|
</q-card-actions>
|
|
</q-card>
|
|
</q-dialog>
|
|
|
|
<q-dialog v-model="showMetadataDialog" full-width full-height>
|
|
<q-card>
|
|
<q-card-section class="row items-center q-pb-none">
|
|
<div class="text-h6">Dataset Summary</div>
|
|
<q-space />
|
|
<q-select v-model="selected_folder_metadata" :options="available_folders" label="Select Dataset" class="q-ma-sm"
|
|
style="min-width: 250px;" standout="custom-standout" v-on:focus="refetch_folders = true" :disable="is_processing"></q-select>
|
|
</q-card-section>
|
|
|
|
<q-card-section class="q-pt-none">
|
|
<q-list bordered separator v-if="metadata_rows.length > 0">
|
|
<q-item v-for="row in metadata_rows" :key="row.parameter">
|
|
<q-item-section>
|
|
<q-item-label class="text-body1">{{ row.parameter }}</q-item-label>
|
|
</q-item-section>
|
|
<q-item-section side>
|
|
<q-item-label caption class="text-body1">{{ row.value }}</q-item-label>
|
|
</q-item-section>
|
|
</q-item>
|
|
</q-list>
|
|
<div v-else class="text-center q-pa-md text-grey-7">
|
|
<q-icon name="info" size="3em" />
|
|
<p class="q-mt-md">No metadata found in registry for this dataset.</p>
|
|
<p class="text-caption">You may need to process the file first.</p>
|
|
</div>
|
|
</q-card-section>
|
|
|
|
<q-card-actions align="right">
|
|
<q-btn flat label="Close" style="color:#009f90" v-close-popup />
|
|
</q-card-actions>
|
|
</q-card>
|
|
</q-dialog>
|