Julia_msi_GUI

A Graphical User Interface for MSI in Julia: https://github.com/CINVESTAV-LABI/julia_mzML_imzML

Local Installation

1. Make sure you have Julia installed, if not, follow the next installation guide for juliaup (recommended) or julia
2. Access the repository using this link:
   https://github.com/Pixelguy14/Julia_msi_GUI
   click "<> Code" button then hit "Download ZIP"
   unzip the file in your desired location
   

Load User Interface

1. Set working directory to Julia_msi_GUI (this repository) in your terminal using:
   Linux:

   cd PathToRepository/Julia_msi_GUI-main
   

   Windows/Mac:

   cd PathToRepository\Julia_msi_GUI-main
   

2. Launch the Julia project in your terminal using:

   julia --project=. start_MSI_GUI.jl
   

3. After the script has finished loading, You can open a page (http://127.0.0.1:1481/) in your browser with the web app running.

Additional notes:
After the first boot initializes the packages in your computer, subsequent uses of the app should take less time to load.
Recomended system requirements: 4 core processor, 8 GB ram

Example data

Robert Winkler. (2023). mzML mass spectrometry and imzML mass spectrometry imaging test data [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10084132