Julian/JuliaMSI
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JuliaMSI/README.md
Pixelguy14 074186573c Renamed to JuliaMSI
2025-03-19 09:50:27 -06:00

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JuliaMSI

A Graphical User Interface for MSI in Julia: https://github.com/CINVESTAV-LABI/julia_mzML_imzML

Local Installation

  1. Make sure you have Julia installed, if not, follow the next installation guide for juliaup (recommended) or julia
  2. Download this repository.

Load User Interface

  1. Set working directory to JuliaMSI (this repository) in your terminal using:
    Linux: 
    cd PathToRepository/JuliaMSI
    Windows/Mac: 
    cd PathToRepository\JuliaMSI
  2. Launch the Julia project in your terminal using: 
    julia --project=. start_MSI_GUI.jl
  3. After the script has finished loading, You can open a page (http://127.0.0.1:1481/) in your browser with the web app running.

Additional notes:
After the first boot initializes the packages in your computer, subsequent uses of the app should take less time to load.
Recomended system requirements: 4 core processor, 8 GB ram

Example data

Robert Winkler. (2023). mzML mass spectrometry and imzML mass spectrometry imaging test data [Data set]. Zenodo. https://doi.org/10.5281/zenodo.10084132