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3d plot contours, fixed startup script

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Pixelguy14 2025-01-13 12:50:57 -06:00
parent e5b796fce0
commit c2ffbc8275
5 changed files with 735 additions and 23 deletions
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735
Manifest.toml
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6
Project.toml
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[deps] [deps]
CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e" Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e"
GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353" GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353"
Libz = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7"
NaturalSort = "c020b1a1-e9b0-503a-9c33-f039bfc54a85"
PlotlyBase = "a03496cd-edff-5a9b-9e67-9cda94a718b5"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
julia_mzML_imzML = "38eb50d3-2fb6-4afa-992a-964ed8562ed9" julia_mzML_imzML = "38eb50d3-2fb6-4afa-992a-964ed8562ed9"
[Genie] [Genie]

2
README.md
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A Graphical User Interface for IMS in Julia: https://github.com/CINVESTAV-LABI/julia_mzML_imzML A Graphical User Interface for IMS in Julia: https://github.com/CINVESTAV-LABI/julia_mzML_imzML
## Local Installation ## Local Installation
1. Make sure you have Julia installed, if not, follow the next installation guide for [juliaup](https://github.com/JuliaLang/juliaup) (recommended) or [julia] (https://julialang.org/downloads/platform/) 1. Make sure you have Julia installed, if not, follow the next installation guide for [juliaup](https://github.com/JuliaLang/juliaup) (recommended) or [julia](https://julialang.org/downloads/platform/)
2. Access the repository using this link:<br> 2. Access the repository using this link:<br>
https://github.com/Pixelguy14/Julia_msi_GUI<br> https://github.com/Pixelguy14/Julia_msi_GUI<br>
click "<b><> Code</b>" button then hit "<b>Download ZIP</b>"<br> click "<b><> Code</b>" button then hit "<b>Download ZIP</b>"<br>

11
app.jl
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) )
# Dummy 3D surface plot # Dummy 3D surface plot
trace3D = PlotlyBase.surface(x=[1:10], y=[1:10], z=[1:10], colorscale="Viridis") x = 1:10
y = 1:10
z = [sin(i * j / 10) for i in x, j in y]
trace3D = PlotlyBase.surface(x=x, y=y, z=z,
contours_z=attr(
show=true,
usecolormap=true,
highlightcolor="limegreen",
project_z=true
), colorscale="Viridis")
# Create conection to frontend # Create conection to frontend
@out plotdata3d = [trace3D] @out plotdata3d = [trace3D]
@out plotlayout3d = layout3D @out plotlayout3d = layout3D

4
start_MSI_GUI.jl
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using Pkg using Pkg
Pkg.activate(".") Pkg.activate(".")
Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort")
Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # With this we ensure it uses the latest library iteration
Pkg.instantiate() Pkg.instantiate()
Pkg.update() Pkg.update()
# Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # with this we ensure it uses the latest library iteration
using Genie using Genie
# Load and configure Genie # Load and configure Genie