From c2ffbc82752b0d2c66ae82fb7944e16504f411da Mon Sep 17 00:00:00 2001 From: Pixelguy14 Date: Mon, 13 Jan 2025 12:50:57 -0600 Subject: [PATCH] 3d plot contours, fixed startup script --- Manifest.toml | 735 +++++++++++++++++++++++++++++++++++++++++++++-- Project.toml | 6 + README.md | 2 +- app.jl | 11 +- start_MSI_GUI.jl | 4 +- 5 files changed, 735 insertions(+), 23 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index e03eca1..1c59403 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,38 @@ julia_version = "1.11.2" manifest_format = "2.0" -project_hash = "c75d5f5467dc61917f29646feafeb45f39cc8de8" +project_hash = "72412ae0f64cc39a16afe23fa1712ccaec97db17" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.1.1" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdaptivePredicates]] +git-tree-sha1 = "7e651ea8d262d2d74ce75fdf47c4d63c07dba7a6" +uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7" +version = "1.2.0" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] @@ -10,6 +41,12 @@ git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" version = "1.1.3" +[[deps.Animations]] +deps = ["Colors"] +git-tree-sha1 = "e092fa223bf66a3c41f9c022bd074d916dc303e7" +uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340" +version = "0.4.2" + [[deps.ArgParse]] deps = ["Logging", "TextWrap"] git-tree-sha1 = "22cf435ac22956a7b45b0168abbc871176e7eecc" @@ -24,6 +61,24 @@ version = "1.1.2" uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" version = "1.11.0" +[[deps.Automa]] +deps = ["PrecompileTools", "SIMD", "TranscodingStreams"] +git-tree-sha1 = "a8f503e8e1a5f583fbef15a8440c8c7e32185df2" +uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" +version = "1.1.0" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" version = "1.11.0" @@ -44,18 +99,55 @@ git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.8+4" +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" + +[[deps.CRC32c]] +uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" +version = "1.11.0" + +[[deps.CRlibm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "e329286945d0cfc04456972ea732551869af1cfc" +uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0" +version = "1.0.1+0" + [[deps.CSTParser]] deps = ["Tokenize"] git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" version = "3.4.3" +[[deps.Cairo]] +deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] +git-tree-sha1 = "71aa551c5c33f1a4415867fe06b7844faadb0ae9" +uuid = "159f3aea-2a34-519c-b102-8c37f9878175" +version = "1.1.1" + +[[deps.CairoMakie]] +deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] +git-tree-sha1 = "0afa2b4ac444b9412130d68493941e1af462e26a" +uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" +version = "0.12.18" + [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.2+1" +[[deps.ChainRulesCore]] +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" +uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +version = "1.25.1" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] git-tree-sha1 = "7eee164f122511d3e4e1ebadb7956939ea7e1c77" @@ -68,6 +160,12 @@ git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.6" +[[deps.ColorBrewer]] +deps = ["Colors", "JSON", "Test"] +git-tree-sha1 = "61c5334f33d91e570e1d0c3eb5465835242582c4" +uuid = "a2cac450-b92f-5266-8821-25eda20663c8" +version = "0.4.0" + [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b" @@ -85,13 +183,11 @@ deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statist git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.10.0" +weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] SpecialFunctionsExt = "SpecialFunctions" - [deps.ColorVectorSpace.weakdeps] - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" @@ -137,6 +233,17 @@ git-tree-sha1 = "4358750bb58a3caefd5f37a4a0c5bfdbbf075252" uuid = "5218b696-f38b-4ac9-8b61-a12ec717816d" version = "0.17.6" +[[deps.ConstructionBase]] +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" +uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" + ConstructionBaseStaticArraysExt = "StaticArrays" + [[deps.Contour]] git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" @@ -180,6 +287,12 @@ git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" version = "1.14.10+0" +[[deps.DelaunayTriangulation]] +deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] +git-tree-sha1 = "e1371a23fd9816080c828d0ce04373857fe73d33" +uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" +version = "1.6.3" + [[deps.DelimitedFiles]] deps = ["Mmap"] git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" @@ -191,6 +304,22 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" version = "1.11.0" +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "7901a6117656e29fa2c74a58adb682f380922c47" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.116" + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" @@ -208,12 +337,29 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" +[[deps.EarCut_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" +uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" +version = "2.2.4+0" + +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" version = "0.0.20230411+1" +[[deps.ExactPredicates]] +deps = ["IntervalArithmetic", "Random", "StaticArrays"] +git-tree-sha1 = "b3f2ff58735b5f024c392fde763f29b057e4b025" +uuid = "429591f6-91af-11e9-00e2-59fbe8cec110" +version = "2.2.8" + [[deps.ExceptionUnwrapping]] deps = ["Test"] git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" @@ -236,6 +382,11 @@ git-tree-sha1 = "4c9ed87a6b3cd90acf24c556f2119533435ded38" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" version = "0.10.13" +[[deps.Extents]] +git-tree-sha1 = "063512a13dbe9c40d999c439268539aa552d1ae6" +uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" +version = "0.1.5" + [[deps.EzXML]] deps = ["Printf", "XML2_jll"] git-tree-sha1 = "380053d61bb9064d6aa4a9777413b40429c79901" @@ -254,6 +405,34 @@ git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" version = "4.4.2+2" +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+3" + +[[deps.FileIO]] +deps = ["Pkg", "Requires", "UUIDs"] +git-tree-sha1 = "2dd20384bf8c6d411b5c7370865b1e9b26cb2ea3" +uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" +version = "1.16.6" +weakdeps = ["HTTP"] + + [deps.FileIO.extensions] + HTTPExt = "HTTP" + +[[deps.FilePaths]] +deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"] +git-tree-sha1 = "919d9412dbf53a2e6fe74af62a73ceed0bce0629" +uuid = "8fc22ac5-c921-52a6-82fd-178b2807b824" +version = "0.8.3" + [[deps.FilePathsBase]] deps = ["Compat", "Dates"] git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361" @@ -269,6 +448,18 @@ weakdeps = ["Mmap", "Test"] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" version = "1.11.0" +[[deps.FillArrays]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" +uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" +version = "1.13.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" + [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -286,12 +477,24 @@ git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" version = "1.3.7" +[[deps.FreeType]] +deps = ["CEnum", "FreeType2_jll"] +git-tree-sha1 = "907369da0f8e80728ab49c1c7e09327bf0d6d999" +uuid = "b38be410-82b0-50bf-ab77-7b57e271db43" +version = "4.1.1" + [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" version = "2.13.3+1" +[[deps.FreeTypeAbstraction]] +deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] +git-tree-sha1 = "d52e255138ac21be31fa633200b65e4e71d26802" +uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" +version = "0.10.6" + [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "846f7026a9decf3679419122b49f8a1fdb48d2d5" @@ -357,10 +560,10 @@ uuid = "4e5d9629-6565-4102-a9ff-45c707eb060e" version = "2.12.0" [[deps.GenieFramework]] -deps = ["GarishPrint", "Genie", "GenieAutoReload", "GenieDevTools", "GeniePackageManager", "Reexport", "Revise", "Stipple", "StipplePlotly", "StippleTable", "StippleTabs", "StippleUI"] -git-tree-sha1 = "38a67cd15769d49c28acd2ae1dd2a229d0a24de1" +deps = ["GarishPrint", "Genie", "GenieAutoReload", "GenieDevTools", "GeniePackageManager", "Reexport", "Revise", "Stipple", "StipplePivotTable", "StipplePlotly", "StippleTable", "StippleTabs", "StippleUI"] +git-tree-sha1 = "d35a79434728f5d04ed0d07ff19a250821133da6" uuid = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353" -version = "2.7.0" +version = "2.8.0" [[deps.GeniePackageManager]] deps = ["Base64", "Genie", "Pkg"] @@ -380,12 +583,35 @@ git-tree-sha1 = "5f5ffc33251d0d5f110072f7a0c07717c9453c97" uuid = "5c4fdc26-39e3-47cf-9034-e533e09961c2" version = "1.1.0" +[[deps.GeoFormatTypes]] +git-tree-sha1 = "ce573eab15760315756de2c82df7406c870c7187" +uuid = "68eda718-8dee-11e9-39e7-89f7f65f511f" +version = "0.4.3" + +[[deps.GeoInterface]] +deps = ["DataAPI", "Extents", "GeoFormatTypes"] +git-tree-sha1 = "f4ee66b6b1872a4ca53303fbb51d158af1bf88d4" +uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" +version = "1.4.0" + +[[deps.GeometryBasics]] +deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] +git-tree-sha1 = "b62f2b2d76cee0d61a2ef2b3118cd2a3215d3134" +uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" +version = "0.4.11" + [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" version = "0.21.0+0" +[[deps.Giflib_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6570366d757b50fabae9f4315ad74d2e40c0560a" +uuid = "59f7168a-df46-5410-90c8-f2779963d0ec" +version = "5.2.3+0" + [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938" @@ -397,12 +623,24 @@ git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" version = "1.3.1" +[[deps.Graphics]] +deps = ["Colors", "LinearAlgebra", "NaNMath"] +git-tree-sha1 = "a641238db938fff9b2f60d08ed9030387daf428c" +uuid = "a2bd30eb-e257-5431-a919-1863eab51364" +version = "1.1.3" + [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.14+1" +[[deps.GridLayoutBase]] +deps = ["GeometryBasics", "InteractiveUtils", "Observables"] +git-tree-sha1 = "dc6bed05c15523624909b3953686c5f5ffa10adc" +uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" +version = "0.11.1" + [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" @@ -426,12 +664,64 @@ git-tree-sha1 = "46313284237aa6ca67a6bce6d6fbd323d19cff59" uuid = "77172c1b-203f-54ac-aa54-3f1198fe9f90" version = "0.5.0" +[[deps.HypergeometricFunctions]] +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" +uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" +version = "0.3.25" + [[deps.HypertextLiteral]] deps = ["Tricks"] git-tree-sha1 = "7134810b1afce04bbc1045ca1985fbe81ce17653" uuid = "ac1192a8-f4b3-4bfe-ba22-af5b92cd3ab2" version = "0.9.5" +[[deps.ImageAxes]] +deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] +git-tree-sha1 = "e12629406c6c4442539436581041d372d69c55ba" +uuid = "2803e5a7-5153-5ecf-9a86-9b4c37f5f5ac" +version = "0.6.12" + +[[deps.ImageBase]] +deps = ["ImageCore", "Reexport"] +git-tree-sha1 = "eb49b82c172811fd2c86759fa0553a2221feb909" +uuid = "c817782e-172a-44cc-b673-b171935fbb9e" +version = "0.1.7" + +[[deps.ImageCore]] +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] +git-tree-sha1 = "8c193230235bbcee22c8066b0374f63b5683c2d3" +uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" +version = "0.10.5" + +[[deps.ImageIO]] +deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs", "WebP"] +git-tree-sha1 = "696144904b76e1ca433b886b4e7edd067d76cbf7" +uuid = "82e4d734-157c-48bb-816b-45c225c6df19" +version = "0.6.9" + +[[deps.ImageMetadata]] +deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"] +git-tree-sha1 = "2a81c3897be6fbcde0802a0ebe6796d0562f63ec" +uuid = "bc367c6b-8a6b-528e-b4bd-a4b897500b49" +version = "0.9.10" + +[[deps.Imath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "0936ba688c6d201805a83da835b55c61a180db52" +uuid = "905a6f67-0a94-5f89-b386-d35d92009cd1" +version = "3.1.11+0" + +[[deps.IndirectArrays]] +git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" +uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" +version = "1.0.0" + +[[deps.Inflate]] +git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" +uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" +version = "0.1.5" + [[deps.Inflector]] deps = ["Unicode"] git-tree-sha1 = "c82a172a07c94887709e613cc67cec0b472fb742" @@ -451,11 +741,66 @@ version = "1.4.2" ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.2.1+0" + [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + +[[deps.IntervalArithmetic]] +deps = ["CRlibm_jll", "LinearAlgebra", "MacroTools", "RoundingEmulator"] +git-tree-sha1 = "ffb76d09ab0dc9f5a27edac2acec13c74a876cc6" +uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" +version = "0.22.21" + + [deps.IntervalArithmetic.extensions] + IntervalArithmeticDiffRulesExt = "DiffRules" + IntervalArithmeticForwardDiffExt = "ForwardDiff" + IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticRecipesBaseExt = "RecipesBase" + + [deps.IntervalArithmetic.weakdeps] + DiffRules = "b552c78f-8df3-52c6-915a-8e097449b14b" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + +[[deps.IntervalSets]] +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +uuid = "8197267c-284f-5f27-9208-e0e47529a953" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" + +[[deps.InverseFunctions]] +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" +uuid = "3587e190-3f89-42d0-90ee-14403ec27112" +version = "0.1.17" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" + [[deps.InvertedIndices]] git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" @@ -466,6 +811,17 @@ git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" version = "0.2.2" +[[deps.Isoband]] +deps = ["isoband_jll"] +git-tree-sha1 = "f9b6d97355599074dc867318950adaa6f9946137" +uuid = "f1662d9f-8043-43de-a69a-05efc1cc6ff4" +version = "0.1.1" + +[[deps.IterTools]] +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" +uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" +version = "1.10.0" + [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" @@ -501,6 +857,12 @@ version = "1.14.1" [deps.JSON3.weakdeps] ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" +[[deps.JpegTurbo]] +deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] +git-tree-sha1 = "fa6d0bcff8583bac20f1ffa708c3913ca605c611" +uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" +version = "0.1.5" + [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" @@ -519,6 +881,12 @@ git-tree-sha1 = "10da5154188682e5c0726823c2b5125957ec3778" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" version = "0.9.38" +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" + [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" @@ -569,6 +937,16 @@ git-tree-sha1 = "0f2da712350b020bc3957f269c9caad516383ee0" uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf" version = "1.3.0" +[[deps.LazyArtifacts]] +deps = ["Artifacts", "Pkg"] +uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" + +[[deps.LazyModules]] +git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" +uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" +version = "0.3.1" + [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -624,9 +1002,9 @@ version = "1.51.1+0" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269" +git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+1" +version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -694,22 +1072,51 @@ git-tree-sha1 = "65f28ad4b594aebe22157d6fac869786a255b7eb" uuid = "6c6e2e6c-3030-632d-7369-2d6c69616d65" version = "0.1.4" +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.2.0+0" + [[deps.MacroTools]] git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.15" +[[deps.Makie]] +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] +git-tree-sha1 = "be3051d08b78206fb5e688e8d70c9e84d0264117" +uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" +version = "0.21.18" + +[[deps.MakieCore]] +deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] +git-tree-sha1 = "9019b391d7d086e841cbeadc13511224bd029ab3" +uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" +version = "0.8.12" + [[deps.Malt]] deps = ["Distributed", "Logging", "RelocatableFolders", "Serialization", "Sockets"] git-tree-sha1 = "02a728ada9d6caae583a0f87c1dd3844f99ec3fd" uuid = "36869731-bdee-424d-aa32-cab38c994e3b" version = "1.1.2" +[[deps.MappedArrays]] +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" +uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" +version = "0.4.2" + [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" +[[deps.MathTeXEngine]] +deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] +git-tree-sha1 = "f45c8916e8385976e1ccd055c9874560c257ab13" +uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" +version = "0.6.2" + [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -747,6 +1154,12 @@ version = "0.1.2" uuid = "a63ad114-7e13-5084-954f-fe012c677804" version = "1.11.0" +[[deps.MosaicViews]] +deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] +git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" +uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" +version = "0.3.4" + [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.12.12" @@ -763,6 +1176,17 @@ git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.3" +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + +[[deps.Netpbm]] +deps = ["FileIO", "ImageCore", "ImageMetadata"] +git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd" +uuid = "f09324ee-3d7c-5217-9330-fc30815ba969" +version = "1.1.1" + [[deps.Nettle]] deps = ["Libdl", "Nettle_jll"] git-tree-sha1 = "6fa48cbae828267848ee32c1bb31d1652e210d7d" @@ -789,6 +1213,15 @@ git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" +[[deps.OffsetArrays]] +git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.15.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" + [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" @@ -800,6 +1233,18 @@ deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" version = "0.3.27+1" +[[deps.OpenEXR]] +deps = ["Colors", "FileIO", "OpenEXR_jll"] +git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7" +uuid = "52e1d378-f018-4a11-a4be-720524705ac7" +version = "0.3.3" + +[[deps.OpenEXR_jll]] +deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "8292dd5c8a38257111ada2174000a33745b06d4e" +uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" +version = "3.2.4+0" + [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" @@ -823,6 +1268,12 @@ git-tree-sha1 = "ad31332567b189f508a3ea8957a2640b1147ab00" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" version = "1.1.23+1" +[[deps.OpenSpecFun_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" +uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" +version = "0.5.6+0" + [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" @@ -839,6 +1290,30 @@ deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" version = "10.42.0+1" +[[deps.PDMats]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" +version = "0.11.31" + +[[deps.PNGFiles]] +deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] +git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" +uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" +version = "0.4.3" + +[[deps.Packing]] +deps = ["GeometryBasics"] +git-tree-sha1 = "bc5bf2ea3d5351edf285a06b0016788a121ce92c" +uuid = "19eb6ba3-879d-56ad-ad62-d5c202156566" +version = "0.5.1" + +[[deps.PaddedViews]] +deps = ["OffsetArrays"] +git-tree-sha1 = "0fac6313486baae819364c52b4f483450a9d793f" +uuid = "5432bcbf-9aad-5242-b902-cca2824c8663" +version = "0.5.12" + [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb" @@ -877,6 +1352,12 @@ weakdeps = ["REPL"] [deps.Pkg.extensions] REPLExt = "REPL" +[[deps.PkgVersion]] +deps = ["Pkg"] +git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" +uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" +version = "0.3.3" + [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] git-tree-sha1 = "41031ef3a1be6f5bbbf3e8073f210556daeae5ca" @@ -889,6 +1370,12 @@ git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" version = "1.4.3" +[[deps.PlotlyBase]] +deps = ["ColorSchemes", "Dates", "DelimitedFiles", "DocStringExtensions", "JSON", "LaTeXStrings", "Logging", "Parameters", "Pkg", "REPL", "Requires", "Statistics", "UUIDs"] +git-tree-sha1 = "56baf69781fc5e61607c3e46227ab17f7040ffa2" +uuid = "a03496cd-edff-5a9b-9e67-9cda94a718b5" +version = "0.8.19" + [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f" @@ -921,6 +1408,11 @@ git-tree-sha1 = "e0864c15334d2c4bac8137ce3359f1174565e719" uuid = "72656b73-756c-7461-726b-72656b6b696b" version = "1.2.0" +[[deps.PolygonOps]] +git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" +uuid = "647866c9-e3ac-4575-94e7-e3d426903924" +version = "0.1.2" + [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -955,6 +1447,12 @@ deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" +[[deps.ProgressMeter]] +deps = ["Distributed", "Printf"] +git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" +uuid = "92933f4c-e287-5a05-a399-4b506db050ca" +version = "1.10.2" + [[deps.PtrArrays]] git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" @@ -972,12 +1470,30 @@ git-tree-sha1 = "0371ca706e3f295481cbf94c8c36692b072285c2" uuid = "d330b81b-6aea-500a-939a-2ce795aea3ee" version = "2.11.5" +[[deps.QOI]] +deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] +git-tree-sha1 = "8b3fc30bc0390abdce15f8822c889f669baed73d" +uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65" +version = "1.0.1" + [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" version = "6.5.2+2" +[[deps.QuadGK]] +deps = ["DataStructures", "LinearAlgebra"] +git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" +uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" +version = "2.11.1" + + [deps.QuadGK.extensions] + QuadGKEnzymeExt = "Enzyme" + + [deps.QuadGK.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" @@ -988,6 +1504,21 @@ deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" version = "1.11.0" +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" + [[deps.RecipesBase]] deps = ["PrecompileTools"] git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" @@ -1045,10 +1576,33 @@ weakdeps = ["Distributed"] [deps.Revise.extensions] DistributedExt = "Distributed" +[[deps.Rmath]] +deps = ["Random", "Rmath_jll"] +git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" +uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" +version = "0.8.0" + +[[deps.Rmath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" +uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" +version = "0.5.1+0" + +[[deps.RoundingEmulator]] +git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b" +uuid = "5eaf0fd0-dfba-4ccb-bf02-d820a40db705" +version = "0.2.1" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMD]] +deps = ["PrecompileTools"] +git-tree-sha1 = "fea870727142270bdf7624ad675901a1ee3b4c87" +uuid = "fdea26ae-647d-5447-a871-4b548cad5224" +version = "3.7.1" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" @@ -1065,17 +1619,46 @@ version = "1.4.8" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" +[[deps.ShaderAbstractions]] +deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] +git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8" +uuid = "65257c39-d410-5151-9873-9b3e5be5013e" +version = "0.4.1" + +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" + [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" +[[deps.SignedDistanceFields]] +deps = ["Random", "Statistics", "Test"] +git-tree-sha1 = "d263a08ec505853a5ff1c1ebde2070419e3f28e9" +uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96" +version = "0.4.0" + [[deps.SimpleBufferStream]] git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.2.0" +[[deps.SimpleTraits]] +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" +version = "0.9.4" + +[[deps.Sixel]] +deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"] +git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" +uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" +version = "0.1.3" + [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" @@ -1091,12 +1674,44 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.11.0" +[[deps.SpecialFunctions]] +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde" +uuid = "276daf66-3868-5448-9aa4-cd146d93841b" +version = "2.5.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [[deps.StableRNGs]] deps = ["Random"] git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.2" +[[deps.StackViews]] +deps = ["OffsetArrays"] +git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c" +uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" +version = "0.1.1" + +[[deps.StaticArrays]] +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454" +uuid = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.9.10" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" + +[[deps.StaticArraysCore]] +git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" +uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +version = "1.4.3" + [[deps.Statistics]] deps = ["LinearAlgebra"] git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" @@ -1119,34 +1734,45 @@ git-tree-sha1 = "29321314c920c26684834965ec2ce0dacc9cf8e5" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.4" +[[deps.StatsFuns]] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" +uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" +version = "1.3.2" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + [[deps.Stipple]] deps = ["Dates", "FilePathsBase", "Genie", "GenieSession", "GenieSessionFileSession", "JSON3", "Logging", "MacroTools", "Mixers", "Observables", "OrderedCollections", "Parameters", "Pkg", "PrecompileTools", "Random", "Reexport", "Requires", "StructTypes", "Tables"] git-tree-sha1 = "0a32740b08234a7876cdfdf1714673d64c9dd148" uuid = "4acbeb90-81a0-11ea-1966-bdaff8155998" version = "0.28.22" +weakdeps = ["DataFrames", "JSON", "OffsetArrays"] [deps.Stipple.extensions] StippleDataFramesExt = "DataFrames" StippleJSONExt = "JSON" StippleOffsetArraysExt = "OffsetArrays" - [deps.Stipple.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +[[deps.StipplePivotTable]] +deps = ["Stipple", "StippleUI", "Tables"] +git-tree-sha1 = "dcd4bb577152dd9945514e352d306a9dc89339a0" +uuid = "adab0226-ee3c-44de-8f2f-393b1bf1e936" +version = "0.3.0" [[deps.StipplePlotly]] deps = ["DataFrames", "Genie", "Requires", "Stipple"] git-tree-sha1 = "05cc51d2268f430b0f8dada1ccc330d1a9d20c3f" uuid = "ec984513-233d-481d-95b0-a3b58b97af2b" version = "0.13.16" +weakdeps = ["PlotlyBase"] [deps.StipplePlotly.extensions] StipplePlotlyPlotlyBaseExt = "PlotlyBase" - [deps.StipplePlotly.weakdeps] - PlotlyBase = "a03496cd-edff-5a9b-9e67-9cda94a718b5" - [[deps.StippleTable]] deps = ["Stipple", "StippleUI"] git-tree-sha1 = "c3a06836672a19fafdb8c600acc077746a4200b2" @@ -1181,6 +1807,27 @@ git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.4.0" +[[deps.StructArrays]] +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10" +uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" +version = "0.6.21" + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.StructTypes]] deps = ["Dates", "UUIDs"] git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8" @@ -1191,6 +1838,10 @@ version = "1.11.0" uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" version = "1.11.0" +[[deps.SuiteSparse]] +deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] +uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" + [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" @@ -1234,6 +1885,12 @@ git-tree-sha1 = "43044b737fa70bc12f6105061d3da38f881a3e3c" uuid = "b718987f-49a8-5099-9789-dcd902bef87d" version = "1.0.2" +[[deps.TiffImages]] +deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"] +git-tree-sha1 = "3c0faa42f2bd3c6d994b06286bba2328eae34027" +uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" +version = "0.11.2" + [[deps.Tokenize]] git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" @@ -1249,6 +1906,11 @@ git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" version = "0.1.9" +[[deps.TriplotBase]] +git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" +uuid = "981d1d27-644d-49a2-9326-4793e63143c3" +version = "0.1.0" + [[deps.URIParser]] deps = ["Unicode"] git-tree-sha1 = "53a9f49546b8d2dd2e688d216421d050c9a31d0d" @@ -1285,15 +1947,12 @@ deps = ["Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.22.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" InverseFunctionsUnitfulExt = "InverseFunctions" - [deps.Unitful.weakdeps] - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" - [[deps.UnitfulLatexify]] deps = ["LaTeXStrings", "Latexify", "Unitful"] git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" @@ -1328,6 +1987,18 @@ git-tree-sha1 = "5db3e9d307d32baba7067b13fc7b5aa6edd4a19a" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" version = "1.36.0+0" +[[deps.WebP]] +deps = ["CEnum", "ColorTypes", "FileIO", "FixedPointNumbers", "ImageCore", "libwebp_jll"] +git-tree-sha1 = "aa1ca3c47f119fbdae8770c29820e5e6119b83f2" +uuid = "e3aaa7dc-3e4b-44e0-be63-ffb868ccd7c1" +version = "0.1.3" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" + [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" @@ -1525,6 +2196,12 @@ git-tree-sha1 = "0ba42241cb6809f1a278d0bcb976e0483c3f1f2d" uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" version = "3.1.1+1" +[[deps.isoband_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c" +uuid = "9a68df92-36a6-505f-a73e-abb412b6bfb4" +version = "0.2.3+0" + [[deps.julia_mzML_imzML]] deps = ["Compat", "Libz", "Plots", "Pluto", "PyPlot"] git-tree-sha1 = "e1aceca0a4b5fad50f5947d3dd5b22a759ff86f3" @@ -1580,12 +2257,24 @@ git-tree-sha1 = "d7b5bbf1efbafb5eca466700949625e07533aff2" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" version = "1.6.45+1" +[[deps.libsixel_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] +git-tree-sha1 = "bf6bb896bd59692d1074fd69af0e5a1b64e64d5e" +uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" +version = "1.10.4+1" + [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+2" +[[deps.libwebp_jll]] +deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"] +git-tree-sha1 = "ccbb625a89ec6195856a50aa2b668a5c08712c94" +uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" +version = "1.4.0+0" + [[deps.mtdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" @@ -1597,6 +2286,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" version = "1.59.0+0" +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" + [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" diff --git a/Project.toml b/Project.toml index 5fc5b8f..9c8b741 100644 --- a/Project.toml +++ b/Project.toml @@ -1,6 +1,12 @@ [deps] +CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" +Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e" GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353" +Libz = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7" +NaturalSort = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +PlotlyBase = "a03496cd-edff-5a9b-9e67-9cda94a718b5" +Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" julia_mzML_imzML = "38eb50d3-2fb6-4afa-992a-964ed8562ed9" [Genie] diff --git a/README.md b/README.md index 656cf02..32bdf07 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ A Graphical User Interface for IMS in Julia: https://github.com/CINVESTAV-LABI/julia_mzML_imzML ## Local Installation -1. Make sure you have Julia installed, if not, follow the next installation guide for [juliaup](https://github.com/JuliaLang/juliaup) (recommended) or [julia] (https://julialang.org/downloads/platform/) +1. Make sure you have Julia installed, if not, follow the next installation guide for [juliaup](https://github.com/JuliaLang/juliaup) (recommended) or [julia](https://julialang.org/downloads/platform/) 2. Access the repository using this link:
https://github.com/Pixelguy14/Julia_msi_GUI
click "<> Code" button then hit "Download ZIP"
diff --git a/app.jl b/app.jl index 75ed4c7..a155542 100644 --- a/app.jl +++ b/app.jl @@ -138,7 +138,16 @@ end ) # Dummy 3D surface plot - trace3D = PlotlyBase.surface(x=[1:10], y=[1:10], z=[1:10], colorscale="Viridis") + x = 1:10 + y = 1:10 + z = [sin(i * j / 10) for i in x, j in y] + trace3D = PlotlyBase.surface(x=x, y=y, z=z, + contours_z=attr( + show=true, + usecolormap=true, + highlightcolor="limegreen", + project_z=true + ), colorscale="Viridis") # Create conection to frontend @out plotdata3d = [trace3D] @out plotlayout3d = layout3D diff --git a/start_MSI_GUI.jl b/start_MSI_GUI.jl index 9041d35..8039ea1 100644 --- a/start_MSI_GUI.jl +++ b/start_MSI_GUI.jl @@ -1,8 +1,10 @@ using Pkg Pkg.activate(".") +Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort") +Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # With this we ensure it uses the latest library iteration Pkg.instantiate() Pkg.update() -# Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # with this we ensure it uses the latest library iteration + using Genie # Load and configure Genie