Pixelguy14
GitHub
commit
bf5a0cd92b
@ -5,14 +5,12 @@ module App
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#julia
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#]
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#add Pkg Libz
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##to add the custom package go to terminal:
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#add https://github.com/CINVESTAV-LABI/julia_mzML_imzML
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using GenieFramework
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using Pkg
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using Libz
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#to add the custom package go to terminal:
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#julia
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#]
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#add https://github.com/CINVESTAV-LABI/julia_mzML_imzML
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using julia_mzML_imzML #could add this to a try-catch to verify they're putting the correct name of the file
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using julia_mzML_imzML
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@genietools
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# == Code import ==
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@ -34,7 +32,8 @@ end
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# @out variables can only be modified by the backend
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# @in variables can be modified by both the backend and the browser
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# variables must be initialized with constant values, or variables defined outside of the @app block
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@out test = "/wp.jpeg"
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#@out test = "/wp.jpeg"#slash means it's getting the info from 'public' folder
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#@out test = "/95.bmp"
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#mkdir("new_folder")
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@in file_route = ""
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@in file_name = ""
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@ -45,6 +44,7 @@ end
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@in triqProb = 0.0
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@in Main_Process = false
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@out indeximg = 0
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@out lastimg = 0
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@in ImgPlus = false
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@in ImgMinus = false
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@in msg = ""
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@ -66,59 +66,69 @@ end
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warning_fr = "is not an imzML file"
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end
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end
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@onchange Nmass begin
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indeximg = Nmass
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lastimg = Nmass
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end
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# the onbutton handler will set the variable to false after the block is executed
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#/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML/royaimg.imzML
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@onbutton Main_Process begin
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test = "/wp2.jpeg"
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indeximg = Nmass
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#spectra = LoadImzml(file_route)
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#slice = getSlice(spectra, Nmass, Tol)
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#SaveBitmap( "$(Nmass).bmp",
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#IntQuant( slice ),
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#ViridisPalette )
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#samplesDir = "/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML"
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#samplesDir = "/home/julian/Documentos/Cinvestav_2024/Web/Julia/JuliaIMZML_GUI/public/Files"
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#fileName = "royaimg.imzML"
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full_route = joinpath( file_route, file_name )
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if isfile(full_route)
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msg="File exists, Nmass=$(Nmass) Tol=$(Tol)"
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msg="File exists, Nmass=$(Nmass) Tol=$(Tol). Please do not press the start button until confirmation"
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spectra = LoadImzml(full_route)
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msg = "File loaded. Please do not press the start button until confirmation"
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slice = GetSlice(spectra, Nmass, Tol)
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if triqProb != 0
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# SaveBitmap( joinpath( file_route, "TrIQ_$(Int(Nmass)).bmp" ),
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# TrIQ( slice, Int(Nmass), triqProb ),
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# ViridisPalette )
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SaveBitmap( joinpath( "public", "TrIQ_$(Int(Nmass)).bmp" ),
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TrIQ( slice, Int(Nmass), triqProb ),
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ViridisPalette )
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else
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# SaveBitmap( joinpath( file_route, "$(Int(Nmass)).bmp" ),
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# IntQuant( slice ),
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# ViridisPalette )
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#test
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SaveBitmap( joinpath( "public", "$(Int(Nmass)).bmp" ),
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IntQuant( slice ),
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ViridisPalette )
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end
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msg="The file has been created inside the 'public' folder of the app"
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else
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msg="File does not exist"
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end
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spectra = LoadImzml(full_route)
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slice = getSlice(spectra, Nmass, Tol)
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if triqProb != 0
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SaveBitmap( joinpath( samplesDir, "TrIQ_$(Nmass).bmp" ),
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TrIQ( slice, Nmass, triqProb ),
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ViridisPalette )
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else
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SaveBitmap( joinpath( file_route, "$(Nmass).bmp" ),
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IntQuant( slice ),
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ViridisPalette )
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end
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spectra = nothing
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slice = nothing
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test = "/$(Int(Nmass)).bmp"#we define the starting value of the images
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GC.gc()
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end
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@onbutton ImgMinus begin
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indeximg-=1
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while !isfile("/$(indeximg).jpeg") && indeximg > 0 && indeximg <999
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indeximg-=1
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while !isfile("public/$(indeximg).bmp") && indeximg > 0
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indeximg -= 1
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end
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if(indeximg <= 0)
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indeximg = Nmass
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if(indeximg <= 0) #if it doesn't find a lower value image
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indeximg = lastimg
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end
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test = "/$(indeximg).jpeg"
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test = "/$(indeximg).bmp"
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msg = "image with the Nmass of $(indeximg)"
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lastimg = indeximg
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end
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@onbutton ImgPlus begin
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indeximg+=1
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while !isfile("/$(indeximg).jpeg") && indeximg > 0 && indeximg <999
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indeximg+=1
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while !isfile("public/$(indeximg).bmp") && indeximg < 2001
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indeximg += 1
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end
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if(indeximg >= 999)
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indeximg = Nmass
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if(indeximg >= 2001)
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indeximg = lastimg
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end
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test = "/$(indeximg).jpeg"
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test = "/$(indeximg).bmp"
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msg = "image with the Nmass of $(indeximg)"
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lastimg = indeximg
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end
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end
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# == Pages ==
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@ -2,13 +2,14 @@
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<h4>Julia mzML imzML GUI </h4>
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</header>
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<!--<q-file v-model="Juliapkg" filled="" label="Insert the file where 'julia_mzML_imzML' is located" accept=".txt"></q-file>-->
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<h6>Please make sure that the file "julia_mzML_imzML" is located in the directory of this program</h6>
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<h6>Please make sure the ibd file is located in the same directory as the imzML file</h6>
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<h6>Once a directory is loaded, you have to restart the app in order to insert a new one</h6>
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<!--<q-file v-model="file_route" filled="" label="Select your imzML file" accept=".txt"></q-file>-->
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<q-input id="ijii1" v-model="file_route" :dense="true" label="Insert the full route to your imzML file"></q-input>
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<q-input id="ijii1" v-model="file_route" :dense="true" label="Insert the route to your imzML file"></q-input>
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<q-input id="ijii1-2" v-model="file_name" :dense="true" label="Insert the name of your imzML file"></q-input>
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<p id="i7brk">full route: {{full_route}} {{warning_fr}}</p>
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</div>
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@ -36,7 +37,7 @@
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<q-input id="i28wb" step="0.01" v-model="triqProb" :dense="true" label="TrIQ Probability" type="number" :rules="[
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val => val >= 0 && val <= 1 || 'Needs to be in range between 0 and 1',
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]" :readonly="!triqEnabled"></q-input>
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<q-btn id="isfqg" color="primary" icon="true" v-on:click="Main_Process = true" label="Start"></q-btn>
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<q-btn id="isfqg" color="primary" icon="play_arrow" v-on:click="Main_Process = true" label="Start"></q-btn>
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</div>
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</div>
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<p>{{msg}}</p>
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@ -48,7 +49,7 @@
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<p></p>
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<q-btn id="ijhjl-2" color="primary" icon="arrow_back" label="Previous" v-on:click="ImgMinus = true"></q-btn>
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<q-btn id="i3zt1" color="primary" icon="arrow_forward" label="Next" v-on:click="ImgPlus = true"></q-btn>
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<q-img id="i6e3p" :src="test"></q-img>
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<q-img id="i6e3p" src="test"></q-img>
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<!--<q-img id="i6e3p-2" src="/Borrador_Julia_GUI.jpeg"></q-img>-->
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</div>
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</div>
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