From 0946d949560f95c40ab506cec4400191d8cf3af7 Mon Sep 17 00:00:00 2001 From: Pixelguy14 <160289138+Pixelguy14@users.noreply.github.com> Date: Mon, 15 Jul 2024 23:01:50 -0600 Subject: [PATCH] Add files via upload --- JuliaIMZML_GUI/app.jl | 86 +++++++++++++++++++++----------------- JuliaIMZML_GUI/app.jl.html | 9 ++-- 2 files changed, 53 insertions(+), 42 deletions(-) diff --git a/JuliaIMZML_GUI/app.jl b/JuliaIMZML_GUI/app.jl index bccb1af..5a1cde4 100644 --- a/JuliaIMZML_GUI/app.jl +++ b/JuliaIMZML_GUI/app.jl @@ -5,14 +5,12 @@ module App #julia #] #add Pkg Libz +##to add the custom package go to terminal: +#add https://github.com/CINVESTAV-LABI/julia_mzML_imzML using GenieFramework using Pkg using Libz -#to add the custom package go to terminal: -#julia -#] -#add https://github.com/CINVESTAV-LABI/julia_mzML_imzML -using julia_mzML_imzML #could add this to a try-catch to verify they're putting the correct name of the file +using julia_mzML_imzML @genietools # == Code import == @@ -34,7 +32,8 @@ end # @out variables can only be modified by the backend # @in variables can be modified by both the backend and the browser # variables must be initialized with constant values, or variables defined outside of the @app block - @out test = "/wp.jpeg" + #@out test = "/wp.jpeg"#slash means it's getting the info from 'public' folder + #@out test = "/95.bmp" #mkdir("new_folder") @in file_route = "" @in file_name = "" @@ -45,6 +44,7 @@ end @in triqProb = 0.0 @in Main_Process = false @out indeximg = 0 + @out lastimg = 0 @in ImgPlus = false @in ImgMinus = false @in msg = "" @@ -66,59 +66,69 @@ end warning_fr = "is not an imzML file" end end + @onchange Nmass begin + indeximg = Nmass + lastimg = Nmass + end # the onbutton handler will set the variable to false after the block is executed #/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML/royaimg.imzML @onbutton Main_Process begin - test = "/wp2.jpeg" indeximg = Nmass - #spectra = LoadImzml(file_route) - #slice = getSlice(spectra, Nmass, Tol) - #SaveBitmap( "$(Nmass).bmp", - #IntQuant( slice ), - #ViridisPalette ) - - #samplesDir = "/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML" - #samplesDir = "/home/julian/Documentos/Cinvestav_2024/Web/Julia/JuliaIMZML_GUI/public/Files" - #fileName = "royaimg.imzML" + full_route = joinpath( file_route, file_name ) if isfile(full_route) - msg="File exists, Nmass=$(Nmass) Tol=$(Tol)" + msg="File exists, Nmass=$(Nmass) Tol=$(Tol). Please do not press the start button until confirmation" + spectra = LoadImzml(full_route) + msg = "File loaded. Please do not press the start button until confirmation" + slice = GetSlice(spectra, Nmass, Tol) + if triqProb != 0 + # SaveBitmap( joinpath( file_route, "TrIQ_$(Int(Nmass)).bmp" ), + # TrIQ( slice, Int(Nmass), triqProb ), + # ViridisPalette ) + SaveBitmap( joinpath( "public", "TrIQ_$(Int(Nmass)).bmp" ), + TrIQ( slice, Int(Nmass), triqProb ), + ViridisPalette ) + else + # SaveBitmap( joinpath( file_route, "$(Int(Nmass)).bmp" ), + # IntQuant( slice ), + # ViridisPalette ) + #test + SaveBitmap( joinpath( "public", "$(Int(Nmass)).bmp" ), + IntQuant( slice ), + ViridisPalette ) + end + msg="The file has been created inside the 'public' folder of the app" else msg="File does not exist" end - spectra = LoadImzml(full_route) - slice = getSlice(spectra, Nmass, Tol) - if triqProb != 0 - SaveBitmap( joinpath( samplesDir, "TrIQ_$(Nmass).bmp" ), - TrIQ( slice, Nmass, triqProb ), - ViridisPalette ) - else - SaveBitmap( joinpath( file_route, "$(Nmass).bmp" ), - IntQuant( slice ), - ViridisPalette ) - end + spectra = nothing + slice = nothing + test = "/$(Int(Nmass)).bmp"#we define the starting value of the images + GC.gc() end @onbutton ImgMinus begin indeximg-=1 - while !isfile("/$(indeximg).jpeg") && indeximg > 0 && indeximg <999 - indeximg-=1 + while !isfile("public/$(indeximg).bmp") && indeximg > 0 + indeximg -= 1 end - if(indeximg <= 0) - indeximg = Nmass + if(indeximg <= 0) #if it doesn't find a lower value image + indeximg = lastimg end - test = "/$(indeximg).jpeg" + test = "/$(indeximg).bmp" msg = "image with the Nmass of $(indeximg)" + lastimg = indeximg end @onbutton ImgPlus begin indeximg+=1 - while !isfile("/$(indeximg).jpeg") && indeximg > 0 && indeximg <999 - indeximg+=1 + while !isfile("public/$(indeximg).bmp") && indeximg < 2001 + indeximg += 1 end - if(indeximg >= 999) - indeximg = Nmass + if(indeximg >= 2001) + indeximg = lastimg end - test = "/$(indeximg).jpeg" + test = "/$(indeximg).bmp" msg = "image with the Nmass of $(indeximg)" + lastimg = indeximg end end # == Pages == diff --git a/JuliaIMZML_GUI/app.jl.html b/JuliaIMZML_GUI/app.jl.html index 4eede1a..c0ab13a 100644 --- a/JuliaIMZML_GUI/app.jl.html +++ b/JuliaIMZML_GUI/app.jl.html @@ -2,13 +2,14 @@

Julia mzML imzML GUI 

-
Please make sure that the file "julia_mzML_imzML" is located in the directory of this program
+
Please make sure the ibd file is located in the same directory as the imzML file
+
Once a directory is loaded, you have to restart the app in order to insert a new one
- +

full route: {{full_route}} {{warning_fr}}

@@ -36,7 +37,7 @@ - +

{{msg}}

@@ -48,7 +49,7 @@

- +