136 lines
4.1 KiB
Julia
136 lines
4.1 KiB
Julia
module App
|
|
# == Packages ==
|
|
# set up Genie development environment. Use the Package Manager to install new packages
|
|
#MUST FIRST USE IN TERMINAL:
|
|
#julia
|
|
#]
|
|
#add Pkg Libz
|
|
using GenieFramework
|
|
using Pkg
|
|
using Libz
|
|
#to add the custom package go to terminal:
|
|
#julia
|
|
#]
|
|
#add https://github.com/CINVESTAV-LABI/julia_mzML_imzML
|
|
using julia_mzML_imzML #could add this to a try-catch to verify they're putting the correct name of the file
|
|
@genietools
|
|
|
|
# == Code import ==
|
|
# add your data analysis code here or in the lib folder. Code in lib/ will be
|
|
# automatically loaded
|
|
function mean_value(x)
|
|
sum(x) / length(x)
|
|
end
|
|
|
|
function contains_word(x, word)
|
|
occursin(word, x)
|
|
end
|
|
|
|
# == Reactive code ==
|
|
# add reactive code to make the UI interactive
|
|
@app begin
|
|
# == Reactive variables ==
|
|
# reactive variables exist in both the Julia backend and the browser with two-way synchronization
|
|
# @out variables can only be modified by the backend
|
|
# @in variables can be modified by both the backend and the browser
|
|
# variables must be initialized with constant values, or variables defined outside of the @app block
|
|
@out test = "/wp.jpeg"
|
|
#mkdir("new_folder")
|
|
@in file_route = ""
|
|
@in file_name = ""
|
|
@out warning_fr = ""
|
|
@in Nmass = 0.0
|
|
@in Tol = 0.0
|
|
@in triqEnabled = false
|
|
@in triqProb = 0.0
|
|
@in Main_Process = false
|
|
@out indeximg = 0
|
|
@in ImgPlus = false
|
|
@in ImgMinus = false
|
|
@in msg = ""
|
|
@out full_route = ""
|
|
|
|
# == Reactive handlers ==
|
|
# reactive handlers watch a variable and execute a block of code when
|
|
# its value changes
|
|
@onchange triqEnabled begin
|
|
if !triqEnabled
|
|
triqProb = 0.0
|
|
end
|
|
end
|
|
@onchange file_name begin
|
|
if contains_word(file_name, ".imzML")
|
|
warning_fr = ""
|
|
full_route = joinpath( file_route, file_name )
|
|
else
|
|
warning_fr = "is not an imzML file"
|
|
end
|
|
end
|
|
|
|
# the onbutton handler will set the variable to false after the block is executed
|
|
#/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML/royaimg.imzML
|
|
@onbutton Main_Process begin
|
|
test = "/wp2.jpeg"
|
|
indeximg = Nmass
|
|
#spectra = LoadImzml(file_route)
|
|
#slice = getSlice(spectra, Nmass, Tol)
|
|
#SaveBitmap( "$(Nmass).bmp",
|
|
#IntQuant( slice ),
|
|
#ViridisPalette )
|
|
|
|
#samplesDir = "/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML"
|
|
#samplesDir = "/home/julian/Documentos/Cinvestav_2024/Web/Julia/JuliaIMZML_GUI/public/Files"
|
|
#fileName = "royaimg.imzML"
|
|
if isfile(full_route)
|
|
msg="File exists, Nmass=$(Nmass) Tol=$(Tol)"
|
|
else
|
|
msg="File does not exist"
|
|
end
|
|
spectra = LoadImzml(full_route)
|
|
slice = getSlice(spectra, Nmass, Tol)
|
|
if triqProb != 0
|
|
SaveBitmap( joinpath( samplesDir, "TrIQ_$(Nmass).bmp" ),
|
|
TrIQ( slice, Nmass, triqProb ),
|
|
ViridisPalette )
|
|
else
|
|
SaveBitmap( joinpath( file_route, "$(Nmass).bmp" ),
|
|
IntQuant( slice ),
|
|
ViridisPalette )
|
|
end
|
|
end
|
|
@onbutton ImgMinus begin
|
|
indeximg-=1
|
|
while !isfile("/$(indeximg).jpeg") && indeximg > 0 && indeximg <999
|
|
indeximg-=1
|
|
end
|
|
if(indeximg <= 0)
|
|
indeximg = Nmass
|
|
end
|
|
test = "/$(indeximg).jpeg"
|
|
msg = "image with the Nmass of $(indeximg)"
|
|
end
|
|
@onbutton ImgPlus begin
|
|
indeximg+=1
|
|
while !isfile("/$(indeximg).jpeg") && indeximg > 0 && indeximg <999
|
|
indeximg+=1
|
|
end
|
|
if(indeximg >= 999)
|
|
indeximg = Nmass
|
|
end
|
|
test = "/$(indeximg).jpeg"
|
|
msg = "image with the Nmass of $(indeximg)"
|
|
end
|
|
end
|
|
# == Pages ==
|
|
# register a new route and the page that will be loaded on access
|
|
@page("/", "app.jl.html")
|
|
end
|
|
|
|
# == Advanced features ==
|
|
#=
|
|
- The @private macro defines a reactive variable that is not sent to the browser.
|
|
This is useful for storing data that is unique to each user session but is not needed
|
|
in the UI.
|
|
@private table = DataFrame(a = 1:10, b = 10:19, c = 20:29)
|
|
|
|
=# |