Pixelguy14
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0164e54d77
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Fixed issues in the UI, added benchmark to compare with old juliaMSI library with the new custom one, incorporating platform detection and memory for amplifying cache pools
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2025-12-08 11:25:42 -06:00 |
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Pixelguy14
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8b1c2d2722
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simplified imzML parsing, finished interactivity for preprocessing in frontend / backend, and processing spectrums is now possible. added n Spectrum plotting
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2025-11-30 18:12:31 -06:00 |
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Pixelguy14
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11c181b3b3
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Interface ready for preprocessing steps handling. style altered to support modular preprocessing pipeline, finished precalculations and preprocessing code, and its respective testing script, added preprocessingpipeline, a handler for the low level functions of preprocessing to work with the high level MSIData in the genie environment.
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2025-11-29 21:47:51 -06:00 |
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Pixelguy14
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bdd9315796
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Fixed preprocessing module, implemented precalculations, this code gives a prediction of the values for the parameters in every step for preprocessing, added test suites for both the parameter generation and the preprocessing pipeline, included a descriptive processing that returns an image with what every parameter does in every step, added instrument metadata structure with the parser for each type of file, to retrieve several important parameters to automate precalculations and preprocessing
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2025-11-25 12:53:57 -06:00 |
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Pixelguy14
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8fa92dc0e5
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improved preprocessing UI, added selective spectrum plot accordig to type (centroid, profile), potentially fixed a bug to retrieve folders on dropdown selectors in startup, improved preprocessing functions and test suite, testing a version control for preprocessing steps
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2025-11-17 13:31:37 -06:00 |
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Pixelguy14
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edfbb77f58
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Added bloom filters custom API, thread safety for multithreading several important functions, streaming processing to reduce GC and Memory allocations calls, buffer pool changed with lock safety, and debug memory monitoring to track leaks, alongside better loading times in general
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2025-11-09 13:41:29 -06:00 |
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Pixelguy14
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a8c2dfcc91
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Implementing foundations for multithreading, standarized mzml converter, profile/centroid detection per pixel, memory-efficient buffer reuse, added preparations to bloom filter alongside buffer pulling, removed memory leaks on linux due to @async macro used on @app module, better error management
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2025-11-06 16:43:34 -06:00 |
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Pixelguy14
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3439a8a4dd
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Added mask interface accessible from the UI, with it you can create slices from your masks or your images of the samples, included masking in the main processing, on the spectra creation, and on the 3d surface plot, started with interface for pre processing spectral data
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2025-11-04 17:20:05 -06:00 |
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Pixelguy14
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e13b5ef0cc
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finished mask creator suite, a new route on the JuliaMSI which helps to create binary masks using either slices or added images, with drawing capability, which in turn will help in the future get more accurate results without extra ambiental noise, added preprocessing test pipeline, along with functions, fixed windows route error for batch processing
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2025-10-31 12:05:03 -06:00 |
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Pixelguy14
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39c92ba850
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bulk and batch processing for multiple imzml and multiple m/z is now available, folder organization for imzml slices in public folder, JSON tracking of processed datasets to save memory time, multiple performance optimizations and UI bug fixes, metadata viewing for all processed files, comparative view between multiple datasets
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2025-10-21 11:56:15 -06:00 |
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Pixelguy14
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39fe2bf52c
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UI now has support for mzml to imzml conversion, made small optimizations to the src folder's API to improve performance
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2025-10-16 10:49:16 -06:00 |
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Pixelguy14
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2fd2b90513
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altered imzML parser to be compatible with timsconverter, small improvements on the UI, other small bug fixes done
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2025-10-13 22:05:56 -06:00 |
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Pixelguy14
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f35acd1d0f
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updated functions to iterate faster to create imzml images (find_mass, get_mz_slice, _iterate_spectra_fast, get_total_spectrum) metadata adquisition and saving, updated docstrings, started work for parser to detect 4 cases, profile uncompressed (current), profile compressed, centroid uncompressed, centroid compressed
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2025-10-09 12:00:00 -06:00 |
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Pixelguy14
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7a0360ef68
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added docstrings to most functions in the src folder, altered msi data calculations for fast iterators, improved total spectrumtimes, added closer colorbar bin calculations, plus more small changes
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2025-10-06 14:58:37 -06:00 |
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Pixelguy14
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22c8d9637b
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integrated MSI_src API into the UI, fixed interface elements, made some processes asynchronous, modified spectrum plots, added sum spectrum, removed use of obsolete julia_mzML_imzML library
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2025-10-02 13:28:15 -06:00 |
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Pixelguy14
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cd1115368f
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finished test script, included instructions in test/readme.md, the test performs mzml, imzml and conversion tests, along with throwing reference plots and images which result from the files
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2025-09-29 10:57:11 -06:00 |
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Pixelguy14
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b1d7838a60
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Implemented imzml and mzml lazy loading, imzml to load spectra matrix, working on mzml to imzml
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2025-09-25 10:42:33 -06:00 |
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