diff --git a/app.jl b/app.jl index 07ef7d0..93ba8e5 100644 --- a/app.jl +++ b/app.jl @@ -286,6 +286,7 @@ include("./julia_imzML_visual.jl") msg="Loading SUM spectrum plot..." sTime=time() plotdata, plotlayout, xSpectraMz, ySpectraMz=sumSpectrumPlot(full_routeMz) + selectedTab="tab2" progressSpectraPlot=false btnPlotDisable=false if endswith(full_route, "imzML") @@ -350,7 +351,7 @@ include("./julia_imzML_visual.jl") current_triq="TrIQ_$(text_nmass).bmp" msgtriq="TrIQ image with the Nmass of $(replace(text_nmass, "_" => "."))" # Create colorbar - bound =julia_mzML_imzML.GetOutlierThres(slice, triqProb) + bound=julia_mzML_imzML.GetOutlierThres(slice, triqProb) levels=range(bound[1],stop=bound[2], length=8) levels=vcat(levels, 2*levels[end]-levels[end-1]) Colorbar(fig[1, 1], colormap=cgrad(:viridis, colorLevel, categorical=true), limits=(0, bound[2]),ticks=levels,tickformat=log_tick_formatter, label="Intensity", size=25) @@ -406,7 +407,7 @@ include("./julia_imzML_visual.jl") else msg="File does not exist or a parameter is incorrect, please try again." warning_msg=true - end| + end GC.gc() # Trigger garbage collection if Sys.islinux() ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS @@ -414,12 +415,12 @@ include("./julia_imzML_visual.jl") btnStartDisable=false btnPlotDisable=false btnOpticalDisable=false + progress=false if isfile(full_routeMz) # We enable coord search and spectra plot creation btnSpectraDisable=false SpectraEnabled=true end - progress=false end @onbutton createSumPlot begin diff --git a/app.jl.html b/app.jl.html index e1e6b49..aa397a8 100644 --- a/app.jl.html +++ b/app.jl.html @@ -7,7 +7,6 @@ name.
It may take a while to generate the image and the plot, please be patient.
To generate the contour or surface plots, you have to select the desired image first using the interface.
-
Syncro file is required to create imzML and ibd files.