From e3cd15157e6dc16a4e041442b49e5b5c98b88a09 Mon Sep 17 00:00:00 2001
From: Pixelguy14 <pixelguy14@gmail.com>
Date: Wed, 15 Jan 2025 11:38:49 -0600
Subject: [PATCH] fixed genie package install

---
 Manifest.toml    | 6 +++---
 Project.toml     | 1 +
 app.jl           | 4 ++--
 start_MSI_GUI.jl | 2 +-
 4 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/Manifest.toml b/Manifest.toml
index 889fab1..45acc6f 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -2,7 +2,7 @@
 
 julia_version = "1.11.2"
 manifest_format = "2.0"
-project_hash = "d3959b0c3a38b987e17c2e3e73afbe28669615d7"
+project_hash = "0eb77e47b715b07e9286c9a5bb8575a4c2a4963c"
 
 [[deps.AbstractFFTs]]
 deps = ["LinearAlgebra"]
@@ -2596,9 +2596,9 @@ version = "1.6.45+1"
 
 [[deps.libsixel_jll]]
 deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"]
-git-tree-sha1 = "bf6bb896bd59692d1074fd69af0e5a1b64e64d5e"
+git-tree-sha1 = "c1733e347283df07689d71d61e14be986e49e47a"
 uuid = "075b6546-f08a-558a-be8f-8157d0f608a5"
-version = "1.10.4+1"
+version = "1.10.5+0"
 
 [[deps.libvorbis_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
diff --git a/Project.toml b/Project.toml
index 607ce84..6d2d0fc 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,7 @@
 [deps]
 CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
 Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
+Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e"
 GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353"
 Images = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
 Libz = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7"
diff --git a/app.jl b/app.jl
index bde7bb0..1b4d040 100644
--- a/app.jl
+++ b/app.jl
@@ -438,7 +438,7 @@ end
                 elevation = Float32.(Array(img_gray)) ./ 255.0 # Normalize between 0 and 1
                 #println("Elevation size:", size(elevation)) 
                 # Smooth the image 
-                sigma = 4.0
+                sigma = 1.0
                 kernel = Kernel.gaussian(sigma)
                 #println(size(kernel))
                 elevation_smoothed = imfilter(elevation, kernel) 
@@ -455,7 +455,7 @@ end
                 x_nticks = min(20, length(x))
                 y_nticks = min(20, length(y))
                 z_nticks = 5
-                aspect_ratio = attr(x = 1, y = length(y) / length(x), z = 0.5)
+                aspect_ratio = attr(x = 1, y = length(y) / length(x), z = 1)
 
                 # Define the layout for the 3D plot
                 layout3D = PlotlyBase.Layout(
diff --git a/start_MSI_GUI.jl b/start_MSI_GUI.jl
index 8490a2f..1ad03d7 100644
--- a/start_MSI_GUI.jl
+++ b/start_MSI_GUI.jl
@@ -3,7 +3,7 @@ Pkg.activate(".")
 Pkg.instantiate()
 Pkg.update()
 Pkg.gc()
-Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort") ; Pkg.add("GenieFramework")
+Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort") ; Pkg.add("GenieFramework") ;Pkg.add("Genie")
 Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # With this we ensure it uses the latest library iteration
 Pkg.add("Images") ; Pkg.add("LinearAlgebra")
 Pkg.instantiate()