make buttons disabled when other process is running, added tabs, added comparative view, added rotation to taller images
This commit is contained in:
Pixelguy14
parent
13a5f7f222
commit
ddc690b659
49
app.jl
49
app.jl
@ -84,6 +84,11 @@ end
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@in ImgPlusT = false
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@in ImgPlusT = false
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@in ImgMinusT = false
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@in ImgMinusT = false
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#TABS
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@out tabIDs = ["tab0","tab1","tab2","tab3"]
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@out tabLabels = ["Image", "TrIQ", "2D Plot","3D Plot"]
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@in selectedTab = "tab0"
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# Interface Images
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# Interface Images
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@out imgInt = "/.bmp" # image Interface
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@out imgInt = "/.bmp" # image Interface
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@out imgIntT = "/.bmp" # image Interface TrIQ
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@out imgIntT = "/.bmp" # image Interface TrIQ
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@ -230,7 +235,10 @@ end
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image_path = joinpath("./public", "TrIQ_$(text_nmass).bmp")
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image_path = joinpath("./public", "TrIQ_$(text_nmass).bmp")
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SaveBitmap(joinpath("public", "TrIQ_$(text_nmass).bmp"),TrIQ(slice, Int(triqColor), triqProb),ViridisPalette)
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SaveBitmap(joinpath("public", "TrIQ_$(text_nmass).bmp"),TrIQ(slice, Int(triqColor), triqProb),ViridisPalette)
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# Flip te image vertically then save it again
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# Flip te image vertically then save it again
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img = load(image_path)
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img = load(image_path)
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if size(img, 1) > size(img, 2) # fix to taller images
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img = reverse(permutedims(img, (2, 1)), dims=1)
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end
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flipped_img = reverse(img, dims=1)
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flipped_img = reverse(img, dims=1)
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save(image_path, flipped_img)
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save(image_path, flipped_img)
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# Use timestamp to refresh image interface container
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# Use timestamp to refresh image interface container
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@ -257,7 +265,10 @@ end
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image_path = joinpath("./public", "MSI_$(text_nmass).bmp")
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image_path = joinpath("./public", "MSI_$(text_nmass).bmp")
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SaveBitmap(joinpath("public", "MSI_$(text_nmass).bmp"),IntQuant(slice),ViridisPalette)
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SaveBitmap(joinpath("public", "MSI_$(text_nmass).bmp"),IntQuant(slice),ViridisPalette)
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# Flip te image vertically then save it again
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# Flip te image vertically then save it again
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img = load(image_path)
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img = load(image_path)
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if size(img, 1) > size(img, 2) # fix to taller images
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img = reverse(permutedims(img, (2, 1)), dims=1)
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end
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flipped_img = reverse(img, dims=1)
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flipped_img = reverse(img, dims=1)
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save(image_path, flipped_img)
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save(image_path, flipped_img)
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# Use timestamp to refresh image interface container
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# Use timestamp to refresh image interface container
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@ -301,14 +312,15 @@ end
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@onbutton createSumPlot begin
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@onbutton createSumPlot begin
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msg = "Sum spectrum plot selected"
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msg = "Sum spectrum plot selected"
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full_route = joinpath( file_route, file_name )
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full_route = joinpath( file_route, file_name )
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progressPlot = true
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if isfile(full_route) # Check if the file exists
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if isfile(full_route) # Check if the file exists
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btnPlotDisable = false
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btnPlotDisable = false
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btnStartDisable = false
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btnStartDisable = false
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full_routeMz = split( full_route, "." )[1] * ".mzML" # Splitting the route from imzml to mzml so the plotting can work
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full_routeMz = split( full_route, "." )[1] * ".mzML" # Splitting the route from imzml to mzml so the plotting can work
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if isfile(full_routeMz) && (full_routeMz2 == "" || full_routeMz2 != full_routeMz) # Check if the mzml exists
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if isfile(full_routeMz) && (full_routeMz2 == "" || full_routeMz2 != full_routeMz) # Check if the mzml exists
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println("I'm working as intended")
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println("I'm working as intended")
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progressPlot = true
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btnPlotDisable = true
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btnPlotDisable = true
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btnStartDisable = true
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msg = "Loading plot..."
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msg = "Loading plot..."
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spectraMz = LoadMzml(full_routeMz)
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spectraMz = LoadMzml(full_routeMz)
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layoutSpectra = PlotlyBase.Layout(
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layoutSpectra = PlotlyBase.Layout(
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@ -334,7 +346,6 @@ end
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ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS
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ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS
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end
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end
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msg = "Plot loaded."
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msg = "Plot loaded."
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btnPlotDisable = false
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full_routeMz2 = full_routeMz # To avoid creating the plot if its the same file read as before
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full_routeMz2 = full_routeMz # To avoid creating the plot if its the same file read as before
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end
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end
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else
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else
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@ -342,6 +353,8 @@ end
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warning_msg = true
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warning_msg = true
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end
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end
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progressPlot = false
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progressPlot = false
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btnPlotDisable = false
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btnStartDisable = false
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end
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end
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# Image loaders based on the position of the current image (increment and decrement for both normal and filter)
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# Image loaders based on the position of the current image (increment and decrement for both normal and filter)
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@ -431,6 +444,9 @@ end
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var = joinpath( "./public", cleaned_imgInt )
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var = joinpath( "./public", cleaned_imgInt )
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if isfile(var)
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if isfile(var)
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progressPlot = true
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btnPlotDisable = true
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btnStartDisable = true
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try
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try
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img = load(var)
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img = load(var)
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#println("Image type:", typeof(img))
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#println("Image type:", typeof(img))
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@ -500,6 +516,9 @@ end
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msg = "image could not be 3d plotted"
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msg = "image could not be 3d plotted"
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warning_msg = true
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warning_msg = true
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end
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end
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progressPlot = false
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btnPlotDisable = false
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btnStartDisable = false
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end
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end
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# 3d plot for TrIQ
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# 3d plot for TrIQ
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@onbutton triq3dPlot begin
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@onbutton triq3dPlot begin
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@ -509,6 +528,9 @@ end
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var = joinpath( "./public", cleaned_imgIntT )
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var = joinpath( "./public", cleaned_imgIntT )
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if isfile(var)
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if isfile(var)
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progressPlot = true
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btnPlotDisable = true
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btnStartDisable = true
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try
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try
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img = load(var)
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img = load(var)
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img_gray = Gray.(img) # Convert to grayscale
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img_gray = Gray.(img) # Convert to grayscale
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@ -572,6 +594,9 @@ end
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msg = "image could not be 3d plotted"
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msg = "image could not be 3d plotted"
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warning_msg = true
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warning_msg = true
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end
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end
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progressPlot = false
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btnPlotDisable = false
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btnStartDisable = false
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end
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end
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# Contour 2d plot
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# Contour 2d plot
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@ -582,6 +607,9 @@ end
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var = joinpath("./public", cleaned_imgInt)
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var = joinpath("./public", cleaned_imgInt)
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if isfile(var)
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if isfile(var)
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progressPlot = true
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btnPlotDisable = true
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btnStartDisable = true
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try
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try
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img = load(var)
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img = load(var)
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# Convert to grayscale
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# Convert to grayscale
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@ -610,7 +638,7 @@ end
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z = elevation_smoothed,
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z = elevation_smoothed,
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x = X[1, :], # Use the first row
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x = X[1, :], # Use the first row
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y = -Y[:, 1], # Use the first column
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y = -Y[:, 1], # Use the first column
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contours_coloring = "lines",
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contours_coloring = "Viridis",
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colorscale = "Viridis"
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colorscale = "Viridis"
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)
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)
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plotdata = [traceContour]
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plotdata = [traceContour]
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@ -631,6 +659,9 @@ end
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msg = "Image could not be 2D plotted"
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msg = "Image could not be 2D plotted"
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warning_msg = true
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warning_msg = true
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end
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end
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progressPlot = false
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btnPlotDisable = false
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btnStartDisable = false
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end
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end
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# Contour 2d plot for TrIQ
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# Contour 2d plot for TrIQ
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@onbutton triqCPlot begin
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@onbutton triqCPlot begin
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@ -640,6 +671,9 @@ end
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var = joinpath("./public", cleaned_imgIntT)
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var = joinpath("./public", cleaned_imgIntT)
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if isfile(var)
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if isfile(var)
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progressPlot = true
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btnPlotDisable = true
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btnStartDisable = true
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try
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try
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img = load(var)
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img = load(var)
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# Convert to grayscale
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# Convert to grayscale
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@ -668,7 +702,7 @@ end
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z = elevation_smoothed,
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z = elevation_smoothed,
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x = X[1, :], # Use the first row
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x = X[1, :], # Use the first row
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y = -Y[:, 1], # Use the first column
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y = -Y[:, 1], # Use the first column
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contours_coloring = "lines",
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contours_coloring = "Viridis",
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colorscale = "Viridis"
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colorscale = "Viridis"
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)
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)
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plotdata = [traceContour]
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plotdata = [traceContour]
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@ -689,6 +723,9 @@ end
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msg = "Image could not be 2D plotted"
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msg = "Image could not be 2D plotted"
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warning_msg = true
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warning_msg = true
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end
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end
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progressPlot = false
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btnPlotDisable = false
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btnStartDisable = false
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end
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end
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@onbutton CompareBtn begin
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@onbutton CompareBtn begin
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197
app.jl.html
197
app.jl.html
@ -5,10 +5,9 @@
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<h4>Julia mzML imzML analysis GUI </h4>
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<h4>Julia mzML imzML analysis GUI </h4>
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<h6>Please make sure the ibd, the mzML and the imzML files are located in the same directory and have the same name.</h6>
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<h6>Please make sure the ibd, the mzML and the imzML files are located in the same directory and have the same name.</h6>
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<h6>It may take a while to generate the image and the plot, please be patient.</h6>
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<h6>It may take a while to generate the image and the plot, please be patient.</h6>
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<h6>To generate the contour or 3D plot, you have to select it using the User Interface</h6>
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<h6>To generate the contour or surface plots, you have to select the desired image first using the interface.</h6>
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</div>
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</div>
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</header>
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</header>
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<!-- TOP -->
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<div id="extDivStyle" class="row col-12 q-pa-xl">
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<div id="extDivStyle" class="row col-12 q-pa-xl">
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<div class="row col-6">
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<div class="row col-6">
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<!-- Left DIV -->
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<!-- Left DIV -->
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@ -91,7 +90,7 @@
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]" :readonly="!triqEnabled" :disable="!triqEnabled"></q-input>
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]" :readonly="!triqEnabled" :disable="!triqEnabled"></q-input>
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</div>
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</div>
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</div>
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</div>
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<div class = "row">
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<div class="row">
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<q-btn id="btnStyle" :loading="progress" :disabled="btnStartDisable" icon="play_arrow" v-on:click="mainProcess = true" padding="lg">
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<q-btn id="btnStyle" :loading="progress" :disabled="btnStartDisable" icon="play_arrow" v-on:click="mainProcess = true" padding="lg">
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Start Process
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Start Process
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<template v-slot:loading>
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<template v-slot:loading>
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@ -108,52 +107,60 @@
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</div>
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</div>
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<div class="row col-6">
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<div class="row col-6">
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<!-- Right DIV -->
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<!-- Right DIV -->
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<div id="intDivStyle" class="st-col col-12 st-module">
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<div id="intDivStyle" class="st-col col-12 col-sm st-module">
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<h6>Image Visualizer</h6>
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<st-tabs class="bg-primary text-white shadow-2" :ids="tabIDs" :labels="tabLabels" v-model="selectedTab"></st-tabs>
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<!-- Btn image changer -->
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<q-tab-panels v-model="selectedTab">
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<div>
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<q-tab-panel name="tab0">
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<q-btn id="btnStyle" icon="arrow_back" rounded v-on:click="ImgMinus = true"></q-btn>
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<!-- Content for Tab 0 -->
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<q-btn id="btnStyle" icon="arrow_forward" rounded v-on:click="ImgPlus = true"></q-btn>
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<!-- Btn image changer -->
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</div>
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<h6>Image Visualizer</h6>
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<!-- Image manager -->
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<div>
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<div id="image-container" class="row st-col col-12 items-center">
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinus = true"></q-btn>
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<div class="st-col col-10">
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlus = true"></q-btn>
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
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</div>
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</div>
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<!-- Image manager -->
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<div class="st-col col-2">
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<div id="image-container" class="row st-col col-12 items-center">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
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<div class="st-col col-10">
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</div>
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
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</div>
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</div>
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<p>{{msgimg}}</p>
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<div class="st-col col-2">
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<!-- Triq Btn image changer -->
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
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<div>
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</div>
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<q-btn id="btnStyle" icon="arrow_back" rounded v-on:click="ImgMinusT = true"></q-btn>
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</div>
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<q-btn id="btnStyle" icon="arrow_forward" rounded v-on:click="ImgPlusT = true"></q-btn>
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<p>{{msgimg}}</p>
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</div>
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</q-tab-panel>
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<!-- Triq Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<q-tab-panel name="tab1">
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<div class="col-10">
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<!-- Content for Tab 1 -->
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
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<!-- Triq Btn image changer -->
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</div>
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<h6>TrIQ Visualizer</h6>
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<div class="col-2">
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<div>
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
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<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinusT = true"></q-btn>
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</div>
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<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlusT = true"></q-btn>
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</div>
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</div>
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<p>{{msgtriq}}</p>
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<!-- Triq Image manager -->
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<div id="image-container" class="row st-col col-12 items-center">
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<div class="col-10">
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<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
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</div>
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<div class="col-2">
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<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
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</div>
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</div>
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<p>{{msgtriq}}</p>
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</q-tab-panel>
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<q-tab-panel name="tab2">
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<!-- Content for Tab 2 -->
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<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="q-pt-none"></plotly>
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</q-tab-panel>
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<q-tab-panel name="tab3">
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<!-- Content for Tab 3 -->
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<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="q-pt-none"></plotly>
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</q-tab-panel>
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</q-tab-panels>
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</div>
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</div>
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</div>
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</div>
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</div>
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</div>
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<!-- Bottom -->
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<div id="extDivStyle" class="row col-12 q-pa-xl">
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<!-- Bottom Left Div -->
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<div class="st-col col-12 st-module q-pa-none" >
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<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="col-12"></plotly>
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</div>
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<!-- Bottom Right Div -->
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<div class="st-col col-12 st-module q-pa-none" >
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<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="col-12"></plotly>
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</div>
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</div>
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<q-dialog v-model="warning_msg">
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<q-dialog v-model="warning_msg">
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<q-card>
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<q-card>
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@ -180,10 +187,104 @@
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<q-card-section class="q-pt-none col-12">
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<q-card-section class="q-pt-none col-12">
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<div class="row">
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<div class="row">
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<div class="col-6">
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<div class="col-6">
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{{msg}}
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<st-tabs class="bg-primary text-white shadow-2" :ids="tabIDs" :labels="tabLabels" v-model="selectedTab"></st-tabs>
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<q-tab-panels v-model="selectedTab">
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<q-tab-panel name="tab0">
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<!-- Content for Tab 0 -->
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<!-- Btn image changer -->
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<div>
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||||||
|
<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinus = true"></q-btn>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlus = true"></q-btn>
|
||||||
|
</div>
|
||||||
|
<!-- Image manager -->
|
||||||
|
<div id="image-container" class="row st-col col-12 items-center">
|
||||||
|
<div class="st-col col-10">
|
||||||
|
<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
|
||||||
|
</div>
|
||||||
|
<div class="st-col col-2">
|
||||||
|
<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
|
||||||
|
</div>
|
||||||
|
</div>
|
||||||
|
<p>{{msgimg}}</p>
|
||||||
|
</q-tab-panel>
|
||||||
|
|
||||||
|
<q-tab-panel name="tab1">
|
||||||
|
<!-- Content for Tab 1 -->
|
||||||
|
<!-- Triq Btn image changer -->
|
||||||
|
<div>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinusT = true"></q-btn>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlusT = true"></q-btn>
|
||||||
|
</div>
|
||||||
|
<!-- Triq Image manager -->
|
||||||
|
<div id="image-container" class="row st-col col-12 items-center">
|
||||||
|
<div class="col-10">
|
||||||
|
<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
|
||||||
|
</div>
|
||||||
|
<div class="col-2">
|
||||||
|
<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
|
||||||
|
</div>
|
||||||
|
</div>
|
||||||
|
<p>{{msgtriq}}</p>
|
||||||
|
</q-tab-panel>
|
||||||
|
<q-tab-panel name="tab2">
|
||||||
|
<!-- Content for Tab 2 -->
|
||||||
|
<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="col-12"></plotly>
|
||||||
|
</q-tab-panel>
|
||||||
|
<q-tab-panel name="tab3">
|
||||||
|
<!-- Content for Tab 3 -->
|
||||||
|
<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="col-12"></plotly>
|
||||||
|
</q-tab-panel>
|
||||||
|
</q-tab-panels>
|
||||||
</div>
|
</div>
|
||||||
<div class="col-6">
|
<div class="col-6">
|
||||||
{{msg}}
|
<st-tabs class="bg-primary text-white shadow-2" :ids="tabIDs" :labels="tabLabels" v-model="selectedTab"></st-tabs>
|
||||||
|
<q-tab-panels v-model="selectedTab">
|
||||||
|
<q-tab-panel name="tab0">
|
||||||
|
<!-- Content for Tab 0 -->
|
||||||
|
<!-- Btn image changer -->
|
||||||
|
<div>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinus = true"></q-btn>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlus = true"></q-btn>
|
||||||
|
</div>
|
||||||
|
<!-- Image manager -->
|
||||||
|
<div id="image-container" class="row st-col col-12 items-center">
|
||||||
|
<div class="st-col col-10">
|
||||||
|
<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
|
||||||
|
</div>
|
||||||
|
<div class="st-col col-2">
|
||||||
|
<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbar"></q-img>
|
||||||
|
</div>
|
||||||
|
</div>
|
||||||
|
<p>{{msgimg}}</p>
|
||||||
|
</q-tab-panel>
|
||||||
|
|
||||||
|
<q-tab-panel name="tab1">
|
||||||
|
<!-- Content for Tab 1 -->
|
||||||
|
<!-- Triq Btn image changer -->
|
||||||
|
<div>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_back" class="q-my-sm" v-on:click="ImgMinusT = true"></q-btn>
|
||||||
|
<q-btn id="btnStyle" icon="arrow_forward" class="q-my-sm on-right" v-on:click="ImgPlusT = true"></q-btn>
|
||||||
|
</div>
|
||||||
|
<!-- Triq Image manager -->
|
||||||
|
<div id="image-container" class="row st-col col-12 items-center">
|
||||||
|
<div class="col-10">
|
||||||
|
<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
|
||||||
|
</div>
|
||||||
|
<div class="col-2">
|
||||||
|
<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
|
||||||
|
</div>
|
||||||
|
</div>
|
||||||
|
<p>{{msgtriq}}</p>
|
||||||
|
</q-tab-panel>
|
||||||
|
<q-tab-panel name="tab2">
|
||||||
|
<!-- Content for Tab 2 -->
|
||||||
|
<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="col-12"></plotly>
|
||||||
|
</q-tab-panel>
|
||||||
|
<q-tab-panel name="tab3">
|
||||||
|
<!-- Content for Tab 3 -->
|
||||||
|
<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="col-12"></plotly>
|
||||||
|
</q-tab-panel>
|
||||||
|
</q-tab-panels>
|
||||||
</div>
|
</div>
|
||||||
</div>
|
</div>
|
||||||
</q-card-section>
|
</q-card-section>
|
||||||
|
|||||||
@ -1 +1 @@
|
|||||||
#btnStyle{background:#009f90;color:rgb(229, 236, 246);}#imgInt{float:left;}#header{display:flex;align-items:center;}#imgLogo{width:100px;height:80px;margin-right:10px;margin-left:10px;}#extDivStyle{background-color:#c9cdb1;border-radius: 10px;}#intDivStyle{padding-top:10px;padding-right:10px;padding-bottom:10px;padding-left:10px;}#colorbar{float:left;}.custom-standout{background-color:#ccd2db!important;color:rgb(229, 236, 246)!important;}
|
#btnStyle{background:#009f90;color:rgb(229, 236, 246);}#imgInt{float:left;}#header{display:flex;align-items:center;}#imgLogo{width:100px;height:80px;margin-right:10px;margin-left:10px;}#extDivStyle{background-color:#c9cdb1;border-radius: 10px;}#intDivStyle{padding-top:10px;padding-right:10px;padding-bottom:10px;padding-left:10px;background-color: #eff2f5;}#colorbar{float:left;}.custom-standout{background-color:#7f8389!important;color:rgb(0, 0, 0)!important;}
|
||||||
Loading…
x
Reference in New Issue
Block a user