Finished the 3d plot topology for images, added contour plots for images, added algebra, fixed image vertical flipping, experimental changes for a faster first boot
This commit is contained in:
Pixelguy14
parent
c2ffbc8275
commit
645d569f03
515
Manifest.toml
515
Manifest.toml
@ -2,7 +2,7 @@
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julia_version = "1.11.2"
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manifest_format = "2.0"
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project_hash = "72412ae0f64cc39a16afe23fa1712ccaec97db17"
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@ -57,6 +57,44 @@ version = "1.2.0"
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ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices"
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ArrayInterfaceCUDAExt = "CUDA"
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ArrayInterfaceCUDSSExt = "CUDSS"
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ArrayInterfaceChainRulesCoreExt = "ChainRulesCore"
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ArrayInterfaceChainRulesExt = "ChainRules"
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ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore"
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ArrayInterfaceReverseDiffExt = "ReverseDiff"
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ArrayInterfaceSparseArraysExt = "SparseArrays"
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ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore"
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ArrayInterfaceTrackerExt = "Tracker"
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@ -88,6 +126,12 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d"
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@ -104,6 +148,12 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
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@ -128,9 +178,9 @@ version = "1.1.1"
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[[deps.CairoMakie]]
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@ -138,6 +188,12 @@ git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642"
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@ -148,6 +204,18 @@ weakdeps = ["SparseArrays"]
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[deps.ChainRulesCore.extensions]
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ChainRulesCoreSparseArraysExt = "SparseArrays"
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[[deps.CloseOpenIntervals]]
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[[deps.Clustering]]
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@ -200,6 +268,11 @@ git-tree-sha1 = "3faae67b8899797592335832fccf4b3c80bb04fa"
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@ -215,6 +288,11 @@ deps = ["Artifacts", "Libdl"]
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@ -249,11 +327,28 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8"
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@ -299,6 +394,17 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae"
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@ -405,6 +511,12 @@ git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd"
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@ -524,16 +636,16 @@ uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
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@ -595,10 +707,10 @@ uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
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@ -606,6 +718,12 @@ git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046"
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@ -635,6 +753,12 @@ git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606"
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@ -658,6 +782,18 @@ git-tree-sha1 = "55c53be97790242c29031e5cd45e8ac296dadda3"
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@ -676,6 +812,11 @@ git-tree-sha1 = "7134810b1afce04bbc1045ca1985fbe81ce17653"
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|
||||
[[deps.IfElse]]
|
||||
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
|
||||
uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173"
|
||||
version = "0.1.1"
|
||||
|
||||
[[deps.ImageAxes]]
|
||||
deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"]
|
||||
git-tree-sha1 = "e12629406c6c4442539436581041d372d69c55ba"
|
||||
@ -688,24 +829,102 @@ git-tree-sha1 = "eb49b82c172811fd2c86759fa0553a2221feb909"
|
||||
uuid = "c817782e-172a-44cc-b673-b171935fbb9e"
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||||
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|
||||
|
||||
[[deps.ImageBinarization]]
|
||||
deps = ["HistogramThresholding", "ImageCore", "LinearAlgebra", "Polynomials", "Reexport", "Statistics"]
|
||||
git-tree-sha1 = "33485b4e40d1df46c806498c73ea32dc17475c59"
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||||
|
||||
[[deps.ImageContrastAdjustment]]
|
||||
deps = ["ImageBase", "ImageCore", "ImageTransformations", "Parameters"]
|
||||
git-tree-sha1 = "eb3d4365a10e3f3ecb3b115e9d12db131d28a386"
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||||
|
||||
[[deps.ImageCore]]
|
||||
deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"]
|
||||
git-tree-sha1 = "8c193230235bbcee22c8066b0374f63b5683c2d3"
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||||
|
||||
[[deps.ImageCorners]]
|
||||
deps = ["ImageCore", "ImageFiltering", "PrecompileTools", "StaticArrays", "StatsBase"]
|
||||
git-tree-sha1 = "24c52de051293745a9bad7d73497708954562b79"
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||||
|
||||
[[deps.ImageDistances]]
|
||||
deps = ["Distances", "ImageCore", "ImageMorphology", "LinearAlgebra", "Statistics"]
|
||||
git-tree-sha1 = "08b0e6354b21ef5dd5e49026028e41831401aca8"
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|
||||
|
||||
[[deps.ImageFiltering]]
|
||||
deps = ["CatIndices", "ComputationalResources", "DataStructures", "FFTViews", "FFTW", "ImageBase", "ImageCore", "LinearAlgebra", "OffsetArrays", "PrecompileTools", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "TiledIteration"]
|
||||
git-tree-sha1 = "33cb509839cc4011beb45bde2316e64344b0f92b"
|
||||
uuid = "6a3955dd-da59-5b1f-98d4-e7296123deb5"
|
||||
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|
||||
|
||||
[[deps.ImageIO]]
|
||||
deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs", "WebP"]
|
||||
git-tree-sha1 = "696144904b76e1ca433b886b4e7edd067d76cbf7"
|
||||
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|
||||
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|
||||
|
||||
[[deps.ImageMagick]]
|
||||
deps = ["FileIO", "ImageCore", "ImageMagick_jll", "InteractiveUtils"]
|
||||
git-tree-sha1 = "c5c5478ae8d944c63d6de961b19e6d3324812c35"
|
||||
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|
||||
version = "1.4.0"
|
||||
|
||||
[[deps.ImageMagick_jll]]
|
||||
deps = ["Artifacts", "Ghostscript_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "OpenJpeg_jll", "Zlib_jll", "libpng_jll"]
|
||||
git-tree-sha1 = "fa01c98985be12e5d75301c4527fff2c46fa3e0e"
|
||||
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|
||||
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|
||||
|
||||
[[deps.ImageMetadata]]
|
||||
deps = ["AxisArrays", "ImageAxes", "ImageBase", "ImageCore"]
|
||||
git-tree-sha1 = "2a81c3897be6fbcde0802a0ebe6796d0562f63ec"
|
||||
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|
||||
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|
||||
|
||||
[[deps.ImageMorphology]]
|
||||
deps = ["DataStructures", "ImageCore", "LinearAlgebra", "LoopVectorization", "OffsetArrays", "Requires", "TiledIteration"]
|
||||
git-tree-sha1 = "6f0a801136cb9c229aebea0df296cdcd471dbcd1"
|
||||
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|
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|
||||
|
||||
[[deps.ImageQualityIndexes]]
|
||||
deps = ["ImageContrastAdjustment", "ImageCore", "ImageDistances", "ImageFiltering", "LazyModules", "OffsetArrays", "PrecompileTools", "Statistics"]
|
||||
git-tree-sha1 = "783b70725ed326340adf225be4889906c96b8fd1"
|
||||
uuid = "2996bd0c-7a13-11e9-2da2-2f5ce47296a9"
|
||||
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|
||||
|
||||
[[deps.ImageSegmentation]]
|
||||
deps = ["Clustering", "DataStructures", "Distances", "Graphs", "ImageCore", "ImageFiltering", "ImageMorphology", "LinearAlgebra", "MetaGraphs", "RegionTrees", "SimpleWeightedGraphs", "StaticArrays", "Statistics"]
|
||||
git-tree-sha1 = "b217d9ded4a95052ffc09acc41ab781f7f72c7ba"
|
||||
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|
||||
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|
||||
|
||||
[[deps.ImageShow]]
|
||||
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|
||||
git-tree-sha1 = "3b5344bcdbdc11ad58f3b1956709b5b9345355de"
|
||||
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|
||||
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|
||||
|
||||
[[deps.ImageTransformations]]
|
||||
deps = ["AxisAlgorithms", "CoordinateTransformations", "ImageBase", "ImageCore", "Interpolations", "OffsetArrays", "Rotations", "StaticArrays"]
|
||||
git-tree-sha1 = "e0884bdf01bbbb111aea77c348368a86fb4b5ab6"
|
||||
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|
||||
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|
||||
|
||||
[[deps.Images]]
|
||||
deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageBinarization", "ImageContrastAdjustment", "ImageCore", "ImageCorners", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"]
|
||||
git-tree-sha1 = "12fdd617c7fe25dc4a6cc804d657cc4b2230302b"
|
||||
uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
|
||||
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|
||||
|
||||
[[deps.Imath_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "0936ba688c6d201805a83da835b55c61a180db52"
|
||||
@ -741,6 +960,12 @@ version = "1.4.2"
|
||||
ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd"
|
||||
Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
|
||||
|
||||
[[deps.IntegralArrays]]
|
||||
deps = ["ColorTypes", "FixedPointNumbers", "IntervalSets"]
|
||||
git-tree-sha1 = "b842cbff3f44804a84fda409745cc8f04c029a20"
|
||||
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|
||||
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|
||||
|
||||
[[deps.IntelOpenMP_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
|
||||
git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e"
|
||||
@ -827,6 +1052,12 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
|
||||
uuid = "82899510-4779-5014-852e-03e436cf321d"
|
||||
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|
||||
|
||||
[[deps.JLD2]]
|
||||
deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
|
||||
git-tree-sha1 = "91d501cb908df6f134352ad73cde5efc50138279"
|
||||
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|
||||
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|
||||
|
||||
[[deps.JLFzf]]
|
||||
deps = ["Pipe", "REPL", "Random", "fzf_jll"]
|
||||
git-tree-sha1 = "71b48d857e86bf7a1838c4736545699974ce79a2"
|
||||
@ -932,6 +1163,12 @@ version = "0.16.5"
|
||||
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
|
||||
SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8"
|
||||
|
||||
[[deps.LayoutPointers]]
|
||||
deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"]
|
||||
git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c"
|
||||
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|
||||
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|
||||
|
||||
[[deps.LazilyInitializedFields]]
|
||||
git-tree-sha1 = "0f2da712350b020bc3957f269c9caad516383ee0"
|
||||
uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf"
|
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@ -1013,10 +1250,10 @@ uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
|
||||
version = "2.40.3+0"
|
||||
|
||||
[[deps.Libtiff_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]
|
||||
git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a"
|
||||
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
|
||||
git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713"
|
||||
uuid = "89763e89-9b03-5906-acba-b20f662cd828"
|
||||
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|
||||
version = "4.4.0+0"
|
||||
|
||||
[[deps.Libuuid_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
@ -1035,6 +1272,12 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
|
||||
uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
|
||||
version = "1.11.0"
|
||||
|
||||
[[deps.LittleCMS_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pkg"]
|
||||
git-tree-sha1 = "110897e7db2d6836be22c18bffd9422218ee6284"
|
||||
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|
||||
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|
||||
|
||||
[[deps.LogExpFunctions]]
|
||||
deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
|
||||
git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f"
|
||||
@ -1061,6 +1304,21 @@ git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3"
|
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|
||||
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|
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|
||||
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|
||||
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|
||||
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|
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|
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|
||||
|
||||
[deps.LoopVectorization.extensions]
|
||||
ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"]
|
||||
SpecialFunctionsExt = "SpecialFunctions"
|
||||
|
||||
[deps.LoopVectorization.weakdeps]
|
||||
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
|
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ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
|
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SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
|
||||
|
||||
[[deps.LoweredCodeUtils]]
|
||||
deps = ["JuliaInterpreter"]
|
||||
git-tree-sha1 = "688d6d9e098109051ae33d126fcfc88c4ce4a021"
|
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@ -1084,16 +1342,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
|
||||
version = "0.5.15"
|
||||
|
||||
[[deps.Makie]]
|
||||
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|
||||
git-tree-sha1 = "be3051d08b78206fb5e688e8d70c9e84d0264117"
|
||||
deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "PNGFiles", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"]
|
||||
git-tree-sha1 = "021b6b64b68f6ee09fb35a1528a2b5a7f48ac00c"
|
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uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
|
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|
||||
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|
||||
|
||||
[[deps.MakieCore]]
|
||||
deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"]
|
||||
git-tree-sha1 = "9019b391d7d086e841cbeadc13511224bd029ab3"
|
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git-tree-sha1 = "c731269d5a2c85ffdc689127a9ba6d73e978a4b1"
|
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|
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|
||||
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|
||||
|
||||
[[deps.Malt]]
|
||||
deps = ["Distributed", "Logging", "RelocatableFolders", "Serialization", "Sockets"]
|
||||
@ -1101,6 +1359,11 @@ git-tree-sha1 = "02a728ada9d6caae583a0f87c1dd3844f99ec3fd"
|
||||
uuid = "36869731-bdee-424d-aa32-cab38c994e3b"
|
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|
||||
|
||||
[[deps.ManualMemory]]
|
||||
git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd"
|
||||
uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667"
|
||||
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|
||||
|
||||
[[deps.MappedArrays]]
|
||||
git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e"
|
||||
uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900"
|
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@ -1133,6 +1396,12 @@ git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102"
|
||||
uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
|
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|
||||
|
||||
[[deps.MetaGraphs]]
|
||||
deps = ["Graphs", "JLD2", "Random"]
|
||||
git-tree-sha1 = "e9650bea7f91c3397eb9ae6377343963a22bf5b8"
|
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|
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|
||||
|
||||
[[deps.Millboard]]
|
||||
git-tree-sha1 = "ea6a5b7e56e76d8051023faaa11d91d1d881dac3"
|
||||
uuid = "39ec1447-df44-5f4c-beaa-866f30b4d3b2"
|
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@ -1181,6 +1450,12 @@ git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21"
|
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uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85"
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||||
|
||||
[[deps.NearestNeighbors]]
|
||||
deps = ["Distances", "StaticArrays"]
|
||||
git-tree-sha1 = "8a3271d8309285f4db73b4f662b1b290c715e85e"
|
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uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
|
||||
version = "0.4.21"
|
||||
|
||||
[[deps.Netpbm]]
|
||||
deps = ["FileIO", "ImageCore", "ImageMetadata"]
|
||||
git-tree-sha1 = "d92b107dbb887293622df7697a2223f9f8176fcd"
|
||||
@ -1245,6 +1520,12 @@ git-tree-sha1 = "8292dd5c8a38257111ada2174000a33745b06d4e"
|
||||
uuid = "18a262bb-aa17-5467-a713-aee519bc75cb"
|
||||
version = "3.2.4+0"
|
||||
|
||||
[[deps.OpenJpeg_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libtiff_jll", "LittleCMS_jll", "Pkg", "libpng_jll"]
|
||||
git-tree-sha1 = "76374b6e7f632c130e78100b166e5a48464256f8"
|
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uuid = "643b3616-a352-519d-856d-80112ee9badc"
|
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version = "2.4.0+0"
|
||||
|
||||
[[deps.OpenLibm_jll]]
|
||||
deps = ["Artifacts", "Libdl"]
|
||||
uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
|
||||
@ -1378,9 +1659,9 @@ version = "0.8.19"
|
||||
|
||||
[[deps.Plots]]
|
||||
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
|
||||
git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f"
|
||||
git-tree-sha1 = "f202a1ca4f6e165238d8175df63a7e26a51e04dc"
|
||||
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
|
||||
version = "1.40.9"
|
||||
version = "1.40.7"
|
||||
|
||||
[deps.Plots.extensions]
|
||||
FileIOExt = "FileIO"
|
||||
@ -1408,11 +1689,35 @@ git-tree-sha1 = "e0864c15334d2c4bac8137ce3359f1174565e719"
|
||||
uuid = "72656b73-756c-7461-726b-72656b6b696b"
|
||||
version = "1.2.0"
|
||||
|
||||
[[deps.PolyesterWeave]]
|
||||
deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
|
||||
git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd"
|
||||
uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
|
||||
version = "0.2.2"
|
||||
|
||||
[[deps.PolygonOps]]
|
||||
git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6"
|
||||
uuid = "647866c9-e3ac-4575-94e7-e3d426903924"
|
||||
version = "0.1.2"
|
||||
|
||||
[[deps.Polynomials]]
|
||||
deps = ["LinearAlgebra", "OrderedCollections", "RecipesBase", "Requires", "Setfield", "SparseArrays"]
|
||||
git-tree-sha1 = "27f6107dc202e2499f0750c628a848ce5d6e77f5"
|
||||
uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
|
||||
version = "4.0.13"
|
||||
|
||||
[deps.Polynomials.extensions]
|
||||
PolynomialsChainRulesCoreExt = "ChainRulesCore"
|
||||
PolynomialsFFTWExt = "FFTW"
|
||||
PolynomialsMakieCoreExt = "MakieCore"
|
||||
PolynomialsMutableArithmeticsExt = "MutableArithmetics"
|
||||
|
||||
[deps.Polynomials.weakdeps]
|
||||
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
|
||||
FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
|
||||
MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
|
||||
MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
|
||||
|
||||
[[deps.PooledArrays]]
|
||||
deps = ["DataAPI", "Future"]
|
||||
git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3"
|
||||
@ -1476,11 +1781,11 @@ git-tree-sha1 = "8b3fc30bc0390abdce15f8822c889f669baed73d"
|
||||
uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65"
|
||||
version = "1.0.1"
|
||||
|
||||
[[deps.Qt6Base_jll]]
|
||||
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
|
||||
git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336"
|
||||
uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56"
|
||||
version = "6.5.2+2"
|
||||
[[deps.Qt5Base_jll]]
|
||||
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"]
|
||||
git-tree-sha1 = "0c03844e2231e12fda4d0086fd7cbe4098ee8dc5"
|
||||
uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1"
|
||||
version = "5.15.3+2"
|
||||
|
||||
[[deps.QuadGK]]
|
||||
deps = ["DataStructures", "LinearAlgebra"]
|
||||
@ -1494,6 +1799,12 @@ version = "2.11.1"
|
||||
[deps.QuadGK.weakdeps]
|
||||
Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
|
||||
|
||||
[[deps.Quaternions]]
|
||||
deps = ["LinearAlgebra", "Random", "RealDot"]
|
||||
git-tree-sha1 = "994cc27cdacca10e68feb291673ec3a76aa2fae9"
|
||||
uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
|
||||
version = "0.7.6"
|
||||
|
||||
[[deps.REPL]]
|
||||
deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"]
|
||||
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
|
||||
@ -1519,6 +1830,12 @@ weakdeps = ["FixedPointNumbers"]
|
||||
[deps.Ratios.extensions]
|
||||
RatiosFixedPointNumbersExt = "FixedPointNumbers"
|
||||
|
||||
[[deps.RealDot]]
|
||||
deps = ["LinearAlgebra"]
|
||||
git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9"
|
||||
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|
||||
version = "0.1.0"
|
||||
|
||||
[[deps.RecipesBase]]
|
||||
deps = ["PrecompileTools"]
|
||||
git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff"
|
||||
@ -1536,6 +1853,12 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
|
||||
uuid = "189a3867-3050-52da-a836-e630ba90ab69"
|
||||
version = "1.2.2"
|
||||
|
||||
[[deps.RegionTrees]]
|
||||
deps = ["IterTools", "LinearAlgebra", "StaticArrays"]
|
||||
git-tree-sha1 = "4618ed0da7a251c7f92e869ae1a19c74a7d2a7f9"
|
||||
uuid = "dee08c22-ab7f-5625-9660-a9af2021b33f"
|
||||
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|
||||
|
||||
[[deps.RegistryInstances]]
|
||||
deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"]
|
||||
git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51"
|
||||
@ -1588,6 +1911,16 @@ git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8"
|
||||
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
|
||||
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|
||||
|
||||
[[deps.Rotations]]
|
||||
deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"]
|
||||
git-tree-sha1 = "5680a9276685d392c87407df00d57c9924d9f11e"
|
||||
uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc"
|
||||
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|
||||
weakdeps = ["RecipesBase"]
|
||||
|
||||
[deps.Rotations.extensions]
|
||||
RotationsRecipesBaseExt = "RecipesBase"
|
||||
|
||||
[[deps.RoundingEmulator]]
|
||||
git-tree-sha1 = "40b9edad2e5287e05bd413a38f61a8ff55b9557b"
|
||||
uuid = "5eaf0fd0-dfba-4ccb-bf02-d820a40db705"
|
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@ -1603,6 +1936,17 @@ git-tree-sha1 = "fea870727142270bdf7624ad675901a1ee3b4c87"
|
||||
uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
|
||||
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|
||||
|
||||
[[deps.SIMDTypes]]
|
||||
git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
|
||||
uuid = "94e857df-77ce-4151-89e5-788b33177be4"
|
||||
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|
||||
|
||||
[[deps.SLEEFPirates]]
|
||||
deps = ["IfElse", "Static", "VectorizationBase"]
|
||||
git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0"
|
||||
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|
||||
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|
||||
|
||||
[[deps.Scratch]]
|
||||
deps = ["Dates"]
|
||||
git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
|
||||
@ -1619,11 +1963,17 @@ version = "1.4.8"
|
||||
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
|
||||
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|
||||
|
||||
[[deps.Setfield]]
|
||||
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|
||||
git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac"
|
||||
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|
||||
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|
||||
|
||||
[[deps.ShaderAbstractions]]
|
||||
deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"]
|
||||
git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8"
|
||||
deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays"]
|
||||
git-tree-sha1 = "818554664a2e01fc3784becb2eb3a82326a604b6"
|
||||
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|
||||
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|
||||
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|
||||
|
||||
[[deps.SharedArrays]]
|
||||
deps = ["Distributed", "Mmap", "Random", "Serialization"]
|
||||
@ -1653,6 +2003,12 @@ git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231"
|
||||
uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d"
|
||||
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|
||||
|
||||
[[deps.SimpleWeightedGraphs]]
|
||||
deps = ["Graphs", "LinearAlgebra", "Markdown", "SparseArrays"]
|
||||
git-tree-sha1 = "4b33e0e081a825dbfaf314decf58fa47e53d6acb"
|
||||
uuid = "47aef6b3-ad0c-573a-a1e2-d07658019622"
|
||||
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|
||||
|
||||
[[deps.Sixel]]
|
||||
deps = ["Dates", "FileIO", "ImageCore", "IndirectArrays", "OffsetArrays", "REPL", "libsixel_jll"]
|
||||
git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6"
|
||||
@ -1696,6 +2052,23 @@ git-tree-sha1 = "46e589465204cd0c08b4bd97385e4fa79a0c770c"
|
||||
uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15"
|
||||
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|
||||
|
||||
[[deps.Static]]
|
||||
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|
||||
git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603"
|
||||
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|
||||
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|
||||
|
||||
[[deps.StaticArrayInterface]]
|
||||
deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"]
|
||||
git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554"
|
||||
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|
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|
||||
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|
||||
|
||||
[deps.StaticArrayInterface.extensions]
|
||||
StaticArrayInterfaceOffsetArraysExt = "OffsetArrays"
|
||||
StaticArrayInterfaceStaticArraysExt = "StaticArrays"
|
||||
|
||||
[[deps.StaticArrays]]
|
||||
deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"]
|
||||
git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454"
|
||||
@ -1809,9 +2182,9 @@ version = "0.4.0"
|
||||
|
||||
[[deps.StructArrays]]
|
||||
deps = ["ConstructionBase", "DataAPI", "Tables"]
|
||||
git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10"
|
||||
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|
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|
||||
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|
||||
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|
||||
|
||||
[deps.StructArrays.extensions]
|
||||
StructArraysAdaptExt = "Adapt"
|
||||
@ -1885,12 +2258,24 @@ git-tree-sha1 = "43044b737fa70bc12f6105061d3da38f881a3e3c"
|
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uuid = "b718987f-49a8-5099-9789-dcd902bef87d"
|
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|
||||
|
||||
[[deps.ThreadingUtilities]]
|
||||
deps = ["ManualMemory"]
|
||||
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|
||||
uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5"
|
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|
||||
|
||||
[[deps.TiffImages]]
|
||||
deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"]
|
||||
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|
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|
||||
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|
||||
|
||||
[[deps.TiledIteration]]
|
||||
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|
||||
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|
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|
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|
||||
|
||||
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|
||||
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|
||||
uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624"
|
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@ -1964,17 +2349,17 @@ git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
|
||||
uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
|
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|
||||
|
||||
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|
||||
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|
||||
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|
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|
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|
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|
||||
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|
||||
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|
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|
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|
||||
|
||||
[[deps.Vulkan_Loader_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]
|
||||
git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59"
|
||||
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|
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|
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|
||||
[[deps.Wayland_jll]]
|
||||
deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
|
||||
git-tree-sha1 = "85c7811eddec9e7f22615371c3cc81a504c508ee"
|
||||
@ -2011,24 +2396,6 @@ git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191"
|
||||
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|
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|
||||
|
||||
[[deps.XZ_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "beef98d5aad604d9e7d60b2ece5181f7888e2fd6"
|
||||
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|
||||
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|
||||
|
||||
[[deps.Xorg_libICE_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c"
|
||||
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|
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|
||||
|
||||
[[deps.Xorg_libSM_jll]]
|
||||
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|
||||
git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce"
|
||||
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|
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|
||||
|
||||
[[deps.Xorg_libX11_jll]]
|
||||
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|
||||
git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283"
|
||||
@ -2107,12 +2474,6 @@ git-tree-sha1 = "dbc53e4cf7701c6c7047c51e17d6e64df55dca94"
|
||||
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|
||||
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|
||||
|
||||
[[deps.Xorg_xcb_util_cursor_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"]
|
||||
git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd"
|
||||
uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43"
|
||||
version = "0.1.4+0"
|
||||
|
||||
[[deps.Xorg_xcb_util_image_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
|
||||
git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
|
||||
@ -2178,24 +2539,12 @@ git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269"
|
||||
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
|
||||
version = "1.5.7+0"
|
||||
|
||||
[[deps.eudev_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
|
||||
git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba"
|
||||
uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06"
|
||||
version = "3.2.9+0"
|
||||
|
||||
[[deps.fzf_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "6e50f145003024df4f5cb96c7fce79466741d601"
|
||||
uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
|
||||
version = "0.56.3+0"
|
||||
|
||||
[[deps.gperf_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
git-tree-sha1 = "0ba42241cb6809f1a278d0bcb976e0483c3f1f2d"
|
||||
uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70"
|
||||
version = "3.1.1+1"
|
||||
|
||||
[[deps.isoband_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
git-tree-sha1 = "51b5eeb3f98367157a7a12a1fb0aa5328946c03c"
|
||||
@ -2233,24 +2582,12 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f"
|
||||
uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f"
|
||||
version = "0.2.2+0"
|
||||
|
||||
[[deps.libevdev_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22"
|
||||
uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc"
|
||||
version = "1.11.0+0"
|
||||
|
||||
[[deps.libfdk_aac_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl"]
|
||||
git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38"
|
||||
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
|
||||
version = "2.0.3+0"
|
||||
|
||||
[[deps.libinput_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"]
|
||||
git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce"
|
||||
uuid = "36db933b-70db-51c0-b978-0f229ee0e533"
|
||||
version = "1.18.0+0"
|
||||
|
||||
[[deps.libpng_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
|
||||
git-tree-sha1 = "d7b5bbf1efbafb5eca466700949625e07533aff2"
|
||||
@ -2275,12 +2612,6 @@ git-tree-sha1 = "ccbb625a89ec6195856a50aa2b668a5c08712c94"
|
||||
uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2"
|
||||
version = "1.4.0+0"
|
||||
|
||||
[[deps.mtdev_jll]]
|
||||
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
|
||||
git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11"
|
||||
uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e"
|
||||
version = "1.1.6+0"
|
||||
|
||||
[[deps.nghttp2_jll]]
|
||||
deps = ["Artifacts", "Libdl"]
|
||||
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
|
||||
|
||||
@ -1,13 +1,11 @@
|
||||
[deps]
|
||||
CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
|
||||
Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
|
||||
Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e"
|
||||
GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353"
|
||||
Images = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
|
||||
Libz = "2ec943e9-cfe8-584d-b93d-64dcb6d567b7"
|
||||
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
|
||||
NaturalSort = "c020b1a1-e9b0-503a-9c33-f039bfc54a85"
|
||||
PlotlyBase = "a03496cd-edff-5a9b-9e67-9cda94a718b5"
|
||||
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
|
||||
julia_mzML_imzML = "38eb50d3-2fb6-4afa-992a-964ed8562ed9"
|
||||
|
||||
[Genie]
|
||||
instantiated_pwd = "/var/home/pixelguy14/Documentos/CINVESTAV_2025/Julia_msi_GUI"
|
||||
|
||||
311
app.jl
311
app.jl
@ -9,7 +9,8 @@ using Colors
|
||||
using julia_mzML_imzML
|
||||
using Statistics
|
||||
using NaturalSort
|
||||
# using ImageMagick
|
||||
using Images
|
||||
using LinearAlgebra
|
||||
@genietools
|
||||
|
||||
# == Code import ==
|
||||
@ -19,6 +20,9 @@ rgb_ViridisPalette = reinterpret(ColorTypes.RGB24, ViridisPalette)
|
||||
|
||||
# == Search functions ==
|
||||
function increment_image(current_image, image_list)
|
||||
if isempty(image_list)
|
||||
return nothing
|
||||
end
|
||||
current_index = findfirst(isequal(current_image), image_list)
|
||||
if current_index == nothing || current_index == length(image_list) || current_image === ""
|
||||
return image_list[length(image_list)] # Return the current image if it's the last one or not found
|
||||
@ -28,6 +32,9 @@ function increment_image(current_image, image_list)
|
||||
end
|
||||
|
||||
function decrement_image(current_image, image_list)
|
||||
if isempty(image_list)
|
||||
return nothing
|
||||
end
|
||||
current_index = findfirst(isequal(current_image), image_list)
|
||||
if current_index == nothing || current_index == 1 || current_image === ""
|
||||
return image_list[1] # Return the current image if it's the first one or not found
|
||||
@ -65,6 +72,8 @@ end
|
||||
@in createSumPlot = false # To generate sum spectrum plot
|
||||
@in image3dPlot = false # To generate 3d plot based on current image
|
||||
@in triq3dPlot = false # To generate 3d plot based on current triq image
|
||||
@in imageCPlot = false # To generate contour plots of current image
|
||||
@in triqCPlot = false # To generate contour plots of current triq image
|
||||
@in progress = false
|
||||
@in progressPlot = false
|
||||
@in triqEnabled = false
|
||||
@ -133,7 +142,12 @@ end
|
||||
scene = attr(
|
||||
xaxis_title = "X",
|
||||
yaxis_title = "Y",
|
||||
zaxis_title = "Z"
|
||||
zaxis_title = "Z",
|
||||
xaxis_nticks = 20,
|
||||
yaxis_nticks = 20,
|
||||
zaxis_nticks = 4,
|
||||
camera = attr(eye = attr(x = 0, y = -1, z = 0.5)),
|
||||
aspectratio = attr(x = 1, y = 1, z = 0.2)
|
||||
)
|
||||
)
|
||||
|
||||
@ -141,7 +155,7 @@ end
|
||||
x = 1:10
|
||||
y = 1:10
|
||||
z = [sin(i * j / 10) for i in x, j in y]
|
||||
trace3D = PlotlyBase.surface(x=x, y=y, z=z,
|
||||
trace3D = PlotlyBase.surface(x=[], y=[], z=[],
|
||||
contours_z=attr(
|
||||
show=true,
|
||||
usecolormap=true,
|
||||
@ -157,14 +171,6 @@ end
|
||||
# == Reactive handlers ==
|
||||
# Reactive handlers watch a variable and execute a block of code when its value changes
|
||||
# The onbutton handler will set the variable to false after the block is executed
|
||||
@onchange triqEnabled begin
|
||||
# just in case that they remove an image manually, we use the least intensive button to get all images and re-order them.
|
||||
msi_bmp = sort(filter(filename -> startswith(filename, "MSI_") && endswith(filename, ".bmp"), readdir("public")),lt=natural)
|
||||
col_msi_png = sort(filter(filename -> startswith(filename, "colorbar_MSI_") && endswith(filename, ".png"), readdir("public")),lt=natural)
|
||||
triq_bmp = sort(filter(filename -> startswith(filename, "TrIQ_") && endswith(filename, ".bmp"), readdir("public")),lt=natural)
|
||||
col_triq_png = sort(filter(filename -> startswith(filename, "colorbar_TrIQ_") && endswith(filename, ".png"), readdir("public")),lt=natural)
|
||||
end
|
||||
|
||||
|
||||
@onchange file_name begin
|
||||
msg = ""
|
||||
@ -219,7 +225,12 @@ end
|
||||
msg = "Incorrect TrIQ values, please adjust accordingly and try again."
|
||||
warning_msg = true
|
||||
else
|
||||
image_path = joinpath("./public", "TrIQ_$(text_nmass).bmp")
|
||||
SaveBitmap(joinpath("public", "TrIQ_$(text_nmass).bmp"),TrIQ(slice, Int(triqColor), triqProb),ViridisPalette)
|
||||
# Flip te image vertically then save it again
|
||||
img = load(image_path)
|
||||
flipped_img = reverse(img, dims=1)
|
||||
save(image_path, flipped_img)
|
||||
# Use timestamp to refresh image interface container
|
||||
imgIntT = "/TrIQ_$(text_nmass).bmp?t=$(timestamp)"
|
||||
# Get current image
|
||||
@ -241,7 +252,12 @@ end
|
||||
#println("all col msi in folder= ",col_triq_png)
|
||||
end
|
||||
else # If we don't use TrIQ
|
||||
image_path = joinpath("./public", "MSI_$(text_nmass).bmp")
|
||||
SaveBitmap(joinpath("public", "MSI_$(text_nmass).bmp"),IntQuant(slice),ViridisPalette)
|
||||
# Flip te image vertically then save it again
|
||||
img = load(image_path)
|
||||
flipped_img = reverse(img, dims=1)
|
||||
save(image_path, flipped_img)
|
||||
# Use timestamp to refresh image interface container
|
||||
imgInt = "/MSI_$(text_nmass).bmp?t=$(timestamp)"
|
||||
# Get current image
|
||||
@ -293,11 +309,23 @@ end
|
||||
btnPlotDisable = true
|
||||
msg = "Loading plot..."
|
||||
spectraMz = LoadMzml(full_routeMz)
|
||||
layoutSpectra = PlotlyBase.Layout(
|
||||
title = "SUM Spectrum plot",
|
||||
xaxis = PlotlyBase.attr(
|
||||
title = "<i>m/z</i>",
|
||||
showgrid = true
|
||||
),
|
||||
yaxis = PlotlyBase.attr(
|
||||
title = "Intensity",
|
||||
showgrid = true
|
||||
)
|
||||
)
|
||||
# dims = size(spectraMz)
|
||||
# scansMax = dims[2] # we get the total of scansMax
|
||||
# traceSpectra = PlotlyBase.scatter(x = spectraMz[1, 1], y = spectraMz[2, 1], mode="lines")
|
||||
traceSpectra = PlotlyBase.scatter(x = mean(spectraMz[1,:]), y = mean(spectraMz[2,:]), mode="lines")
|
||||
plotdata = [traceSpectra] # We add the data from spectra to the plot
|
||||
plotlayout = layoutSpectra
|
||||
spectraMz = nothing # Important for memory cleaning
|
||||
GC.gc() # Trigger garbage collection
|
||||
if Sys.islinux()
|
||||
@ -319,6 +347,10 @@ end
|
||||
@onbutton ImgMinus begin
|
||||
# Append a query string to force the image to refresh
|
||||
timestamp = string(time_ns())
|
||||
# Update the array of images listed in the public folder
|
||||
msi_bmp = sort(filter(filename -> startswith(filename, "MSI_") && endswith(filename, ".bmp"), readdir("public")),lt=natural)
|
||||
col_msi_png = sort(filter(filename -> startswith(filename, "colorbar_MSI_") && endswith(filename, ".png"), readdir("public")),lt=natural)
|
||||
|
||||
new_msi = decrement_image(current_msi, msi_bmp)
|
||||
new_col_msi = decrement_image(current_col_msi, col_msi_png)
|
||||
|
||||
@ -334,6 +366,10 @@ end
|
||||
@onbutton ImgPlus begin
|
||||
# Append a query string to force the image to refresh
|
||||
timestamp = string(time_ns())
|
||||
# Update the array of images listed in the public folder
|
||||
msi_bmp = sort(filter(filename -> startswith(filename, "MSI_") && endswith(filename, ".bmp"), readdir("public")),lt=natural)
|
||||
col_msi_png = sort(filter(filename -> startswith(filename, "colorbar_MSI_") && endswith(filename, ".png"), readdir("public")),lt=natural)
|
||||
|
||||
new_msi = increment_image(current_msi, msi_bmp)
|
||||
new_col_msi = increment_image(current_col_msi, col_msi_png)
|
||||
|
||||
@ -352,6 +388,9 @@ end
|
||||
timestamp = string(time_ns())
|
||||
new_msi = decrement_image(current_triq, triq_bmp)
|
||||
new_col_msi = decrement_image(current_col_triq, col_triq_png)
|
||||
# Update the array of images with TrIQ filter listed in the public folder
|
||||
triq_bmp = sort(filter(filename -> startswith(filename, "TrIQ_") && endswith(filename, ".bmp"), readdir("public")),lt=natural)
|
||||
col_triq_png = sort(filter(filename -> startswith(filename, "colorbar_TrIQ_") && endswith(filename, ".png"), readdir("public")),lt=natural)
|
||||
|
||||
current_triq = new_msi
|
||||
current_col_triq = new_col_msi
|
||||
@ -368,6 +407,9 @@ end
|
||||
timestamp = string(time_ns())
|
||||
new_msi = increment_image(current_triq, triq_bmp)
|
||||
new_col_msi = increment_image(current_col_triq, col_triq_png)
|
||||
# Update the array of images with TrIQ filter listed in the public folder
|
||||
triq_bmp = sort(filter(filename -> startswith(filename, "TrIQ_") && endswith(filename, ".bmp"), readdir("public")),lt=natural)
|
||||
col_triq_png = sort(filter(filename -> startswith(filename, "colorbar_TrIQ_") && endswith(filename, ".png"), readdir("public")),lt=natural)
|
||||
|
||||
current_triq = new_msi
|
||||
current_col_triq = new_col_msi
|
||||
@ -384,72 +426,265 @@ end
|
||||
msg = "Image 3D plot selected"
|
||||
cleaned_imgInt = replace(imgInt, r"\?.*" => "")
|
||||
cleaned_imgInt = lstrip(cleaned_imgInt, '/')
|
||||
var1 = joinpath( "public", cleaned_imgInt )
|
||||
if isfile(var1)
|
||||
var = joinpath( "./public", cleaned_imgInt )
|
||||
|
||||
if isfile(var)
|
||||
try
|
||||
img = FileIO.load(File{DataFormat{:BMP}}(var1))
|
||||
img = load(var)
|
||||
#println("Image type:", typeof(img))
|
||||
img_gray = Gray.(img) # Convert to grayscale
|
||||
#println("Grayscale image type:", typeof(img_gray))
|
||||
img_array = Array(img_gray)
|
||||
catch e
|
||||
msg = "Failed to load and process image: $e"
|
||||
warning_msg = true
|
||||
println(msg)
|
||||
end
|
||||
elevation = img_array / 255.0 # Normalize between 0 and 1
|
||||
elevation = Float32.(Array(img_gray)) ./ 255.0 # Normalize between 0 and 1
|
||||
#println("Elevation size:", size(elevation))
|
||||
# Smooth the image
|
||||
sigma = 4.0
|
||||
elevation_smoothed = imfilter(elevation, Kernel.gaussian(sigma))
|
||||
kernel = Kernel.gaussian(sigma)
|
||||
#println(size(kernel))
|
||||
elevation_smoothed = imfilter(elevation, kernel)
|
||||
#println("Smoothed elevation size:", size(elevation_smoothed))
|
||||
# Transpose the elevation_smoothed array
|
||||
# Create the X, Y meshgrid coordinates
|
||||
x = 1:size(elevation_smoothed, 2)
|
||||
y = 1:size(elevation_smoothed, 1)
|
||||
X, Y = ndgrid(x, y)
|
||||
trace3D = PlotlyBase.scatter(x = X[1, :], y =Y[:, 1], z=elevation_smoothed, colorscale="Viridis")
|
||||
X = repeat(reshape(x, 1, length(x)), length(y), 1)
|
||||
#println("Size of X:", size(X))
|
||||
Y = repeat(reshape(y, length(y), 1), 1, length(x))
|
||||
#println("Size of Y:", size(Y))
|
||||
# Calculate the number of ticks and aspect ratio for the 3d plot
|
||||
x_nticks = min(20, length(x))
|
||||
y_nticks = min(20, length(y))
|
||||
z_nticks = 5
|
||||
aspect_ratio = attr(x = 1, y = length(y) / length(x), z = 0.5)
|
||||
|
||||
# Define the layout for the 3D plot
|
||||
layout3D = PlotlyBase.Layout(
|
||||
title = "3D Surface Plot",
|
||||
scene = attr(
|
||||
xaxis_nticks = x_nticks,
|
||||
yaxis_nticks = y_nticks,
|
||||
zaxis_nticks = z_nticks,
|
||||
camera = attr(eye = attr(x = 0, y = -1, z = 0.5)),
|
||||
aspectratio = aspect_ratio
|
||||
)
|
||||
)
|
||||
if size(elevation_smoothed, 1) < size(elevation_smoothed, 2)
|
||||
# Transpose the elevation_smoothed array if Y axis is longer than X axis to fix chopping
|
||||
elevation_smoothed = transpose(elevation_smoothed)
|
||||
Y = -Y
|
||||
end
|
||||
|
||||
trace3D = PlotlyBase.surface(x = X[1, :], y = Y[:, 1], z = elevation_smoothed,
|
||||
contours_z = attr(
|
||||
show = true,
|
||||
usecolormap = true,
|
||||
highlightcolor = "limegreen",
|
||||
project_z = true
|
||||
), colorscale = "Viridis")
|
||||
plotdata3d = [trace3D] # We add the data from the image to the plot
|
||||
plotlayout3d = layout3D # we update the style of the plot to fit the image.
|
||||
spectraMz = nothing # Important for memory cleaning
|
||||
GC.gc() # Trigger garbage collection
|
||||
if Sys.islinux()
|
||||
ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS
|
||||
end
|
||||
msg = "Plot loaded."
|
||||
catch e
|
||||
msg = "Failed to load and process image: $e"
|
||||
warning_msg = true
|
||||
println(msg)
|
||||
end
|
||||
else
|
||||
msg = "image could not be 3d plotted"
|
||||
warning_msg = true
|
||||
end
|
||||
end
|
||||
# 3d plot for TrIQ
|
||||
@onbutton triq3dPlot begin
|
||||
msg = "TrIQ 3D plot selected"
|
||||
cleaned_imgIntT = replace(imgIntT, r"\?.*" => "")
|
||||
cleaned_imgIntT = lstrip(cleaned_imgIntT, '/')
|
||||
var = joinpath( "./public", cleaned_imgIntT )
|
||||
|
||||
if isfile(var)
|
||||
try
|
||||
img = load(var)
|
||||
img_gray = Gray.(img) # Convert to grayscale
|
||||
img_array = Array(img_gray)
|
||||
elevation = Float32.(Array(img_gray)) ./ 255.0 # Normalize between 0 and 1
|
||||
# Smooth the image
|
||||
sigma = 4.0
|
||||
kernel = Kernel.gaussian(sigma)
|
||||
elevation_smoothed = imfilter(elevation, kernel)
|
||||
|
||||
# Create the X, Y meshgrid coordinates
|
||||
x = 1:size(elevation_smoothed, 2)
|
||||
y = 1:size(elevation_smoothed, 1)
|
||||
X = repeat(reshape(x, 1, length(x)), length(y), 1)
|
||||
Y = repeat(reshape(y, length(y), 1), 1, length(x))
|
||||
|
||||
# Calculate the number of ticks and aspect ratio for the 3d plot
|
||||
x_nticks = min(20, length(x))
|
||||
y_nticks = min(20, length(y))
|
||||
z_nticks = 5
|
||||
aspect_ratio = attr(x = 1, y = length(y) / length(x), z = 0.5)
|
||||
|
||||
# Define the layout for the 3D plot
|
||||
layout3D = PlotlyBase.Layout(
|
||||
title = "3D Surface Plot",
|
||||
scene = attr(
|
||||
xaxis_nticks = x_nticks,
|
||||
yaxis_nticks = y_nticks,
|
||||
zaxis_nticks = z_nticks,
|
||||
camera = attr(eye = attr(x = 0, y = -1, z = 0.5)),
|
||||
aspectratio = aspect_ratio
|
||||
)
|
||||
)
|
||||
if size(elevation_smoothed, 1) < size(elevation_smoothed, 2)
|
||||
# Transpose the elevation_smoothed array if Y axis is longer than X axis to fix chopping
|
||||
elevation_smoothed = transpose(elevation_smoothed)
|
||||
Y = -Y
|
||||
end
|
||||
|
||||
trace3D = PlotlyBase.surface(x = X[1, :], y = Y[:, 1], z = elevation_smoothed,
|
||||
contours_z = attr(
|
||||
show = true,
|
||||
usecolormap = true,
|
||||
highlightcolor = "limegreen",
|
||||
project_z = true
|
||||
), colorscale = "Viridis")
|
||||
plotdata3d = [trace3D] # We add the data from the image to the plot
|
||||
plotlayout3d = layout3D # we update the style of the plot to fit the image.
|
||||
spectraMz = nothing # Important for memory cleaning
|
||||
GC.gc() # Trigger garbage collection
|
||||
if Sys.islinux()
|
||||
ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS
|
||||
end
|
||||
msg = "Plot loaded."
|
||||
catch e
|
||||
msg = "Failed to load and process image: $e"
|
||||
warning_msg = true
|
||||
println(msg)
|
||||
end
|
||||
else
|
||||
msg = "image could not be 3d plotted"
|
||||
warning_msg = true
|
||||
end
|
||||
end
|
||||
|
||||
@onbutton triq3dPlot begin
|
||||
msg = "TrIQ 3D plot selected"
|
||||
cleaned_imgIntT = replace(imgIntT, r"\?.*" => "")
|
||||
cleaned_imgIntT = lstrip(cleaned_imgIntT, '/')
|
||||
var1 = joinpath( "public", cleaned_imgIntT )
|
||||
if isfile(var1)
|
||||
# Contour 2d plot
|
||||
@onbutton imageCPlot begin
|
||||
msg = "Image 2D plot selected"
|
||||
cleaned_imgInt = replace(imgInt, r"\?.*" => "")
|
||||
cleaned_imgInt = lstrip(cleaned_imgInt, '/')
|
||||
var = joinpath("./public", cleaned_imgInt)
|
||||
|
||||
if isfile(var)
|
||||
try
|
||||
img = FileIO.load(File{DataFormat{:BMP}}(var1))
|
||||
img_gray = Gray.(img) # Convert to grayscale
|
||||
img = load(var)
|
||||
# Convert to grayscale
|
||||
img_gray = Gray.(img)
|
||||
img_array = Array(img_gray)
|
||||
elevation = Float32.(Array(img_gray)) ./ 255.0 # Normalize between 0 and 1
|
||||
|
||||
# Smooth the image
|
||||
sigma = 4.0
|
||||
kernel = Kernel.gaussian(sigma)
|
||||
elevation_smoothed = imfilter(elevation, kernel)
|
||||
|
||||
# Create the X, Y meshgrid coordinates
|
||||
x = 1:size(elevation_smoothed, 2)
|
||||
y = 1:size(elevation_smoothed, 1)
|
||||
X = repeat(reshape(x, 1, length(x)), length(y), 1)
|
||||
Y = repeat(reshape(y, length(y), 1), 1, length(x))
|
||||
|
||||
layoutContour = PlotlyBase.Layout(
|
||||
title = "2D Topographic Map",
|
||||
xaxis_title = "X",
|
||||
yaxis_title = "Y",
|
||||
margin = attr(l = 65, r = 50, b = 65, t = 90)
|
||||
)
|
||||
traceContour = PlotlyBase.contour(
|
||||
z = elevation_smoothed,
|
||||
x = X[1, :], # Use the first row
|
||||
y = -Y[:, 1], # Use the first column
|
||||
contours_coloring = "lines",
|
||||
colorscale = "Viridis"
|
||||
)
|
||||
plotdata = [traceContour]
|
||||
plotlayout = layoutContour
|
||||
|
||||
spectraMz = nothing # Important for memory cleaning
|
||||
GC.gc() # Trigger garbage collection
|
||||
if Sys.islinux()
|
||||
ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure Julia returns the freed memory to OS
|
||||
end
|
||||
msg = "Plot loaded."
|
||||
catch e
|
||||
msg = "Failed to load and process image: $e"
|
||||
warning_msg = true
|
||||
println(msg)
|
||||
end
|
||||
elevation = img_array / 255.0 # Normalize between 0 and 1
|
||||
else
|
||||
msg = "Image could not be 2D plotted"
|
||||
warning_msg = true
|
||||
end
|
||||
end
|
||||
# Contour 2d plot for TrIQ
|
||||
@onbutton triqCPlot begin
|
||||
msg = "Image 2D plot selected"
|
||||
cleaned_imgIntT = replace(imgIntT, r"\?.*" => "")
|
||||
cleaned_imgIntT = lstrip(cleaned_imgIntT, '/')
|
||||
var = joinpath("./public", cleaned_imgIntT)
|
||||
|
||||
if isfile(var)
|
||||
try
|
||||
img = load(var)
|
||||
# Convert to grayscale
|
||||
img_gray = Gray.(img)
|
||||
img_array = Array(img_gray)
|
||||
elevation = Float32.(Array(img_gray)) ./ 255.0 # Normalize between 0 and 1
|
||||
|
||||
# Smooth the image
|
||||
sigma = 4.0
|
||||
elevation_smoothed = imfilter(elevation, Kernel.gaussian(sigma))
|
||||
kernel = Kernel.gaussian(sigma)
|
||||
elevation_smoothed = imfilter(elevation, kernel)
|
||||
|
||||
# Create the X, Y meshgrid coordinates
|
||||
x = 1:size(elevation_smoothed, 2)
|
||||
y = 1:size(elevation_smoothed, 1)
|
||||
X, Y = ndgrid(x, y)
|
||||
trace3D = PlotlyBase.scatter(x = X[1, :], y =Y[:, 1], z=elevation_smoothed, colorscale="Viridis")
|
||||
plotdata3d = [trace3D] # We add the data from the image to the plot
|
||||
X = repeat(reshape(x, 1, length(x)), length(y), 1)
|
||||
Y = repeat(reshape(y, length(y), 1), 1, length(x))
|
||||
|
||||
layoutContour = PlotlyBase.Layout(
|
||||
title = "2D Topographic Map",
|
||||
xaxis_title = "X",
|
||||
yaxis_title = "Y",
|
||||
margin = attr(l = 65, r = 50, b = 65, t = 90)
|
||||
)
|
||||
traceContour = PlotlyBase.contour(
|
||||
z = elevation_smoothed,
|
||||
x = X[1, :], # Use the first row
|
||||
y = -Y[:, 1], # Use the first column
|
||||
contours_coloring = "lines",
|
||||
colorscale = "Viridis"
|
||||
)
|
||||
plotdata = [traceContour]
|
||||
plotlayout = layoutContour
|
||||
|
||||
spectraMz = nothing # Important for memory cleaning
|
||||
GC.gc() # Trigger garbage collection
|
||||
if Sys.islinux()
|
||||
ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS
|
||||
ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure Julia returns the freed memory to OS
|
||||
end
|
||||
msg = "Plot loaded."
|
||||
catch e
|
||||
msg = "Failed to load and process image: $e"
|
||||
warning_msg = true
|
||||
println(msg)
|
||||
end
|
||||
else
|
||||
msg = "image could not be 3d plotted"
|
||||
msg = "Image could not be 2D plotted"
|
||||
warning_msg = true
|
||||
end
|
||||
end
|
||||
|
||||
49
app.jl.html
49
app.jl.html
@ -5,17 +5,17 @@
|
||||
<h4>Julia mzML imzML analysis GUI </h4>
|
||||
<h6>Please make sure the ibd, the mzML and the imzML files are located in the same directory and have the same name.</h6>
|
||||
<h6>It may take a while to generate the image and the plot, please be patient.</h6>
|
||||
<h6>To generate the contour or 3D plot, you have to select it using the User Interface</h6>
|
||||
</div>
|
||||
</header>
|
||||
<!-- TOP -->
|
||||
<div class="row">
|
||||
<div id="extDivStyle" class="st-col col-12 col-sm st-module">
|
||||
<div class="row">
|
||||
<div id="extDivStyle" class="row col-12 q-pa-xl">
|
||||
<div class="row col-6">
|
||||
<!-- Left DIV -->
|
||||
<div id="intDivStyle" class="st-col col-12 col-sm st-module">
|
||||
<div id="intDivStyle" class="st-col col-12 st-module">
|
||||
<!--<q-file v-model="file_route" filled="" label="Select your imzML file" accept=".imzML"></q-file>-->
|
||||
<q-input id="textRoute" standout="custom-standout" v-model="file_route" label="Insert the route to your imzML file"></q-input>
|
||||
<div class="row st-col col-12 col-sm">
|
||||
<div class="row st-col col-12">
|
||||
<q-input id="textName" class="col-9" standout="custom-standout" v-model="file_name" label="Insert the name of your imzML file"></q-input>
|
||||
<q-btn-dropdown
|
||||
id="btnStyle"
|
||||
@ -37,6 +37,18 @@
|
||||
</q-item-section>
|
||||
</q-item>
|
||||
|
||||
<q-item clickable v-close-popup v-on:click="imageCPlot = true">
|
||||
<q-item-section>
|
||||
<q-item-label>Image Contour Plot</q-item-label>
|
||||
</q-item-section>
|
||||
</q-item>
|
||||
|
||||
<q-item clickable v-close-popup v-on:click="triqCPlot = true">
|
||||
<q-item-section>
|
||||
<q-item-label>TrIQ Contour Plot</q-item-label>
|
||||
</q-item-section>
|
||||
</q-item>
|
||||
|
||||
<q-item clickable v-close-popup v-on:click="image3dPlot = true">
|
||||
<q-item-section>
|
||||
<q-item-label>Image 3D Plot</q-item-label>
|
||||
@ -88,12 +100,10 @@
|
||||
</q-btn>
|
||||
<p>{{msg}}</p>
|
||||
</div>
|
||||
</div><!-- <plotly :data="plotdata" :layout="plotlayout"> </plotly>-->
|
||||
</div>
|
||||
<div id="extDivStyle" class="st-col col-12 col-sm st-module">
|
||||
<div class="row">
|
||||
<div class="row col-6">
|
||||
<!-- Right DIV -->
|
||||
<div id="intDivStyle" class="st-col col-12 col-sm st-module">
|
||||
<div id="intDivStyle" class="st-col col-12 st-module">
|
||||
<h6>Image Visualizer</h6>
|
||||
<!-- Btn image changer -->
|
||||
<div>
|
||||
@ -101,8 +111,8 @@
|
||||
<q-btn id="btnStyle" icon="arrow_forward" rounded v-on:click="ImgPlus = true"></q-btn>
|
||||
</div>
|
||||
<!-- Image manager -->
|
||||
<div id="image-container" class="row st-col col-12 col-sm items-center">
|
||||
<div style="max-height: 500px; overflow: auto;" class="st-col col-10">
|
||||
<div id="image-container" class="row st-col col-12 items-center">
|
||||
<div class="st-col col-10">
|
||||
<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgInt" fit="scale-down"></q-img>
|
||||
</div>
|
||||
<div class="st-col col-2">
|
||||
@ -116,11 +126,11 @@
|
||||
<q-btn id="btnStyle" icon="arrow_forward" rounded v-on:click="ImgPlusT = true"></q-btn>
|
||||
</div>
|
||||
<!-- Triq Image manager -->
|
||||
<div id="image-container" class="row st-col col-12 col-sm items-center">
|
||||
<div style="max-height: 500px; overflow: auto;" class="st-col col-10">
|
||||
<div id="image-container" class="row st-col col-12 items-center">
|
||||
<div class="col-10">
|
||||
<q-img id="imgInt" class="q-ma-none q-pa-none" :src="imgIntT" fit="scale-down"></q-img>
|
||||
</div>
|
||||
<div class="st-col col-2">
|
||||
<div class="col-2">
|
||||
<q-img id="colorbar" class="q-ma-none q-pa-none" :src="colorbarT"></q-img>
|
||||
</div>
|
||||
</div>
|
||||
@ -128,16 +138,15 @@
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<!-- Bottom -->
|
||||
<div class="row">
|
||||
<div id="extDivStyle" class="row col-12 q-pa-xl">
|
||||
<!-- Bottom Left Div -->
|
||||
<div class="st-col col-12 col-sm st-module" >
|
||||
<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="st-col col-12 col-sm-12"></plotly>
|
||||
<div class="st-col col-12 st-module q-pa-none" >
|
||||
<plotly id="plotStyle" :data="plotdata" :layout="plotlayout" class="col-12"></plotly>
|
||||
</div>
|
||||
<!-- Bottom Right Div -->
|
||||
<div class="st-col col-12 col-sm st-module" >
|
||||
<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="st-col col-12 col-sm-12"></plotly>
|
||||
<div class="st-col col-12 st-module q-pa-none" >
|
||||
<plotly id="plotStyle3d" :data="plotdata3d" :layout="plotlayout3d" class="col-12"></plotly>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -4,9 +4,11 @@ PENDING
|
||||
avoid image enlargement -> CURRENT WIP
|
||||
image flip upside down
|
||||
colorbar revamp
|
||||
3d topography for images -> CURRENT WIP
|
||||
Multiple plot types
|
||||
|
||||
Tag for time it takes in creating image and creating plots -> CURRENT WIP
|
||||
Create function that makes the imzML from mzML files
|
||||
Possibility to add multiple imzML to process at once ?
|
||||
Pixel selection marks
|
||||
|
||||
DONE
|
||||
Quicker start for julia GUI
|
||||
@ -17,3 +19,4 @@ DONE
|
||||
Code cleanse
|
||||
better code readability
|
||||
Better blind search for images
|
||||
3d topography for images
|
||||
|
||||
@ -1 +1 @@
|
||||
#btnStyle{background:#009f90;color:rgb(229, 236, 246);}#imgInt{float:left;}#header{display:flex;align-items:center;}#imgLogo{width:100px;height:80px;margin-right:10px;margin-left:10px;}#extDivStyle{background-color:#c9cdb1;}#intDivStyle{padding-top:10px;padding-right:10px;padding-bottom:10px;padding-left:10px;background-color:rgb(229, 236, 246);}#colorbar{float:left;}.custom-standout{background-color:#ccd2db!important;color:rgb(229, 236, 246)!important;}
|
||||
#btnStyle{background:#009f90;color:rgb(229, 236, 246);}#imgInt{float:left;}#header{display:flex;align-items:center;}#imgLogo{width:100px;height:80px;margin-right:10px;margin-left:10px;}#extDivStyle{background-color:#c9cdb1;border-radius: 10px;}#intDivStyle{padding-top:10px;padding-right:10px;padding-bottom:10px;padding-left:10px;}#colorbar{float:left;}.custom-standout{background-color:#ccd2db!important;color:rgb(229, 236, 246)!important;}
|
||||
@ -1,7 +1,11 @@
|
||||
using Pkg
|
||||
Pkg.activate(".")
|
||||
Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort")
|
||||
Pkg.instantiate()
|
||||
Pkg.update()
|
||||
Pkg.gc()
|
||||
Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort") ; Pkg.add("GenieFramework")
|
||||
Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # With this we ensure it uses the latest library iteration
|
||||
Pkg.add("Images") ; Pkg.add("LinearAlgebra")
|
||||
Pkg.instantiate()
|
||||
Pkg.update()
|
||||
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user