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Pixelguy14
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@ -2,7 +2,7 @@
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julia_version = "1.10.4"
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manifest_format = "2.0"
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project_hash = "2289dc4b622847faad50ee48ccc2bada375b46bf"
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project_hash = "49392750aeb43599cd2d6b9c2e6f6cbff6f08de0"
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[[deps.ArgParse]]
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deps = ["Logging", "TextWrap"]
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@ -1,4 +1,5 @@
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[deps]
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Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e"
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GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353"
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[Genie]
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@ -21,7 +21,7 @@ function mean_value(x)
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sum(x) / length(x)
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end
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function contains_word(x, word)
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function contains_word(x, word) #ease to read
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occursin(word, x)
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end
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@ -33,8 +33,7 @@ end
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# @out variables can only be modified by the backend
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# @in variables can be modified by both the backend and the browser
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# variables must be initialized with constant values, or variables defined outside of the @app block
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#@out test = "/wp.jpeg"#slash means it's getting the info from 'public' folder
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#@out test = "/95.bmp"
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#@out test = "/test.bmp"#slash means it's getting the info from 'public' folder
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#mkdir("new_folder")
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@in file_route = ""
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@in file_name = ""
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@ -42,7 +41,9 @@ end
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@in Nmass = 0.0
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@in Tol = 0.0
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@in triqEnabled = false
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@out Disab_btn = false
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@in triqProb = 0.0
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@in triqColor = 0
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@in Main_Process = false
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@out indeximg = 0
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@out indeximgTriq = 0
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@ -65,6 +66,7 @@ end
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@onchange triqEnabled begin
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if !triqEnabled
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triqProb = 0.0
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triqColor = 0
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end
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end
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@onchange file_name begin
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@ -85,34 +87,42 @@ end
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# the onbutton handler will set the variable to false after the block is executed
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#/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML/royaimg.imzML
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@onbutton Main_Process begin
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GC.gc() # Trigger garbage collection
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Disab_btn = true #We disable the button to avoid multiple requests
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indeximg = Nmass
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full_route = joinpath( file_route, file_name )
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full_route = joinpath(file_route, file_name)
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if isfile(full_route)
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msg="File exists, Nmass=$(Nmass) Tol=$(Tol). Please do not press the start button until confirmation"
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msg = "File exists, Nmass=$(Nmass) Tol=$(Tol). Please do not press the start button until confirmation"
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spectra = LoadImzml(full_route)
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msg = "File loaded. Please do not press the start button until confirmation"
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slice = GetSlice(spectra, Nmass, Tol)
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if triqProb != 0 #if we have TrIQ
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SaveBitmap( joinpath( "public", "TrIQ_$(Int(Nmass)).bmp" ),
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TrIQ( slice, Int(Nmass), triqProb ),
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ViridisPalette )
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testT = "/TrIQ_$(Int(Nmass)).bmp"#we define the starting value of the images
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if triqProb != 0 # if we have TrIQ
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if triqColor < 1 || triqColor > 256
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triqColor = 1
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end
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if triqProb < 0 || triqProb > 1
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triqProb = 0.1
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end
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SaveBitmap(joinpath("public", "TrIQ_$(Int(Nmass)).bmp"),
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TrIQ(slice, Int(triqColor), triqProb),
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ViridisPalette)
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testT = "/TrIQ_$(Int(Nmass)).bmp" # we define the starting value of the images
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msgtriq = "TrIQ image with the Nmass of $(Int(Nmass))"
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else
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SaveBitmap( joinpath( "public", "$(Int(Nmass)).bmp" ),
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IntQuant( slice ),
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ViridisPalette )
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test = "/$(Int(Nmass)).bmp"#we define the starting value of the images
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else # if we don't
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SaveBitmap(joinpath("public", "$(Int(Nmass)).bmp"),
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IntQuant(slice),
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ViridisPalette)
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test = "/$(Int(Nmass)).bmp" # we define the starting value of the images
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msgimg = "image with the Nmass of $(Int(Nmass))"
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end
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msg="The file has been created inside the 'public' folder of the app"
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msg = "The file has been created inside the 'public' folder of the app"
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else
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msg="File does not exist"
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msg = "File does not exist"
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end
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spectra = nothing #Important for memory cleaning
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spectra = nothing # Important for memory cleaning
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slice = nothing
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#Important for memory cleaning
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GC.gc()
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GC.gc() # Trigger garbage collection
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Disab_btn = false
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end
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@onbutton ImgMinus begin
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indeximg-=1
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@ -1,51 +1,57 @@
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<header>
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<h4>Julia mzML imzML GUI </h4>
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</header>
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<!--<q-file v-model="Juliapkg" filled="" label="Insert the file where 'julia_mzML_imzML' is located" accept=".txt"></q-file>-->
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<h6>Please make sure the ibd file is located in the same directory as the imzML file</h6>
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<h6>It may take a while to generate the image, don't press the Start button more than once until it finishes</h6>
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<div class="st-col col-12 col-sm st-module"> <!--Left DIV-->
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<!--<q-file v-model="file_route" filled="" label="Select your imzML file" accept=".txt"></q-file>-->
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<q-input id="ijii1" v-model="file_route" :dense="true" label="Insert the route to your imzML file"></q-input>
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<q-input id="ijii1-2" v-model="file_name" :dense="true" label="Insert the name of your imzML file"></q-input>
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<p id="i7brk">full route: {{full_route}} {{warning_fr}}</p>
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</div>
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</div>
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<q-input id="icc9d" v-model="Nmass" :dense="true" label="Mass Value" type="number" :rules="[
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val => val >= 0 || 'Need positive mass values',
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]"></q-input>
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</div>
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<div class="st-col col-12 col-sm st-module">
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<q-input id="iqt3l" step="0.01" v-model="Tol" :dense="true" label="Tolerance" type="number" :rules="[
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val => !!val || '* Required',
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val => val >= 0 && val <= 1 || 'Needs to be in range between 0 and 1',
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]"></q-input>
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</div>
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</div>
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<q-toggle id="igqon" v-on:click="triqEnabled" v-model="triqEnabled" color="blue" label="Add TrIQ!"></q-toggle>
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<div class="st-col col-12 col-sm">
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<q-input id="icc9d" v-model="Nmass" :dense="true" label="Mass Value" type="number" :rules="[
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val => val >= 0 || 'Need positive mass values',
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]"></q-input>
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</div>
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<div class="st-col col-12 col-sm">
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<q-input id="iqt3l" step="0.01" v-model="Tol" :dense="true" label="Tolerance" type="number" :rules="[
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val => !!val || '* Required',
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val => val >= 0 && val <= 1 || 'Needs to be in range between 0 and 1',
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]"></q-input>
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</div>
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</div>
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<q-input id="i28wb" step="0.01" v-model="triqProb" :dense="true" label="TrIQ Probability" type="number" :rules="[
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val => val >= 0 && val <= 1 || 'Needs to be in range between 0 and 1',
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]" :readonly="!triqEnabled"></q-input>
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<q-btn id="isfqg" color="primary" icon="play_arrow" v-on:click="Main_Process = true" label="Start"></q-btn>
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<div class="row">
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<div class="st-col col-12 col-sm">
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<q-toggle id="igqon" v-on:click="triqEnabled" v-model="triqEnabled" color="blue" label="Add TrIQ!"></q-toggle>
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</div>
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</div>
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<div class="row">
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<div class="st-col col-12 col-sm-8">
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<q-input id="i28wb" step="0.01" v-model="triqProb" :dense="true" label="TrIQ Probability" type="number" :rules="[
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val => val >= 0 && val <= 1 || 'Needs to be in range between 0 and 1',
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]" :readonly="!triqEnabled"></q-input>
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</div>
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<div class="st-col col-12 col-sm-4">
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<q-input id="i28wb-2" step="1" v-model="triqColor" :dense="true" label="TrIQ Color" type="number" :rules="[
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val => val >= 0 && val <= 256 || 'Needs to be in range between 1 and 256',
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]" :readonly="!triqEnabled"></q-input>
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</div>
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</div>
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<q-btn id="isfqg" :disabled="Disab_btn" color="primary" icon="play_arrow" v-on:click="Main_Process = true" label="Start"></q-btn>
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<p>{{msg}}</p>
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</div>
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</div>
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<p>{{msg}}</p>
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<plotly id="i1j1o" data="plotdata"></plotly>
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<!--<plotly id="i1j1o" data="plotdata"></plotly>-->
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</div>
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<div class="st-col col-12 col-sm st-module">
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<div class="row">
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<div class="st-col col-12 col-sm st-module">
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<div class="st-col col-12 col-sm st-module"> <!--Right DIV-->
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<h6>Image Visualizer</h6><br>
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<p></p>
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<q-btn id="ijhjl-2" color="primary" icon="arrow_back" label="Previous" v-on:click="ImgMinus = true"></q-btn>
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@ -56,8 +62,7 @@
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<q-btn id="i3zt1-2" color="primary" icon="arrow_forward" label="Next" v-on:click="ImgPlusT = true"></q-btn>
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<q-img id="i6e3p-2" :src="testT"></q-img>
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<p>{{msgtriq}}</p>
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<!--<q-img id="i6e3p-2" src="/Borrador_Julia_GUI.jpeg"></q-img>-->
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</div>
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</div>
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</div>
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</div>
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</div>
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