Add files via upload

JuliaIMZML_GUI/Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.4"
 manifest_format = "2.0"
-project_hash = "2289dc4b622847faad50ee48ccc2bada375b46bf"
+project_hash = "49392750aeb43599cd2d6b9c2e6f6cbff6f08de0"
 
 [[deps.ArgParse]]
 deps = ["Logging", "TextWrap"]

JuliaIMZML_GUI/Project.toml

@@ -1,4 +1,5 @@
 [deps]
+Genie = "c43c736e-a2d1-11e8-161f-af95117fbd1e"
 GenieFramework = "a59fdf5c-6bf0-4f5d-949c-a137c9e2f353"
 
 [Genie]

JuliaIMZML_GUI/app.jl

@@ -21,7 +21,7 @@ function mean_value(x)
     sum(x) / length(x)
 end
 
-function contains_word(x, word)
+function contains_word(x, word) #ease to read
     occursin(word, x)
 end
 
@@ -33,8 +33,7 @@ end
     # @out variables can only be modified by the backend
     # @in variables can be modified by both the backend and the browser
     # variables must be initialized with constant values, or variables defined outside of the @app block
-    #@out test = "/wp.jpeg"#slash means it's getting the info from 'public' folder
+    #@out test = "/test.bmp"#slash means it's getting the info from 'public' folder
-    #@out test = "/95.bmp"
     #mkdir("new_folder")
     @in file_route = ""
     @in file_name = ""
@@ -42,7 +41,9 @@ end
     @in Nmass = 0.0
     @in Tol = 0.0
     @in triqEnabled = false
+    @out Disab_btn = false
     @in triqProb = 0.0
+    @in triqColor = 0
     @in Main_Process = false
     @out indeximg = 0
     @out indeximgTriq = 0
@@ -65,6 +66,7 @@ end
     @onchange triqEnabled begin
         if !triqEnabled
             triqProb = 0.0
+            triqColor = 0
         end
     end
     @onchange file_name begin
@@ -85,6 +87,8 @@ end
     # the onbutton handler will set the variable to false after the block is executed
     #/home/julian/Documentos/Cinvestav_2024/Web/Archivos IMZML/royaimg.imzML
     @onbutton Main_Process begin
+        GC.gc() # Trigger garbage collection
+        Disab_btn = true #We disable the button to avoid multiple requests
         indeximg = Nmass
         full_route = joinpath(file_route, file_name)
         if isfile(full_route)
@@ -93,12 +97,18 @@ end
             msg = "File loaded. Please do not press the start button until confirmation"
             slice = GetSlice(spectra, Nmass, Tol)
             if triqProb != 0 # if we have TrIQ
+                if triqColor < 1 || triqColor > 256
+                    triqColor = 1
+                end
+                if triqProb < 0 || triqProb > 1
+                    triqProb = 0.1
+                end
                 SaveBitmap(joinpath("public", "TrIQ_$(Int(Nmass)).bmp"),
-                TrIQ( slice, Int(Nmass), triqProb ),
+                        TrIQ(slice, Int(triqColor), triqProb),
                         ViridisPalette)
                 testT = "/TrIQ_$(Int(Nmass)).bmp" # we define the starting value of the images
                 msgtriq = "TrIQ image with the Nmass of $(Int(Nmass))"
-            else
+            else # if we don't
                 SaveBitmap(joinpath("public", "$(Int(Nmass)).bmp"),
                         IntQuant(slice),
                         ViridisPalette)
@@ -111,8 +121,8 @@ end
         end
         spectra = nothing # Important for memory cleaning
         slice = nothing
-        #Important for memory cleaning
+        GC.gc() # Trigger garbage collection
-        GC.gc()
+        Disab_btn = false
     end
     @onbutton ImgMinus begin
         indeximg-=1

JuliaIMZML_GUI/app.jl.html

@@ -1,26 +1,23 @@
 <header>
     <h4>Julia mzML imzML GUI&nbsp;</h4>
 </header>
-<!--<q-file v-model="Juliapkg" filled="" label="Insert the file where 'julia_mzML_imzML' is located" accept=".txt"></q-file>-->
 <h6>Please make sure the ibd file is located in the same directory as the imzML file</h6>
 <h6>It may take a while to generate the image, don't press the Start button more than once until it finishes</h6>
 <div class="row">
     <div class="st-col col-12 col-sm st-module">
         <div class="row">
-            <div class="st-col col-12 col-sm st-module">
+            <div class="st-col col-12 col-sm st-module"> <!--Left DIV-->
                 <!--<q-file v-model="file_route" filled="" label="Select your imzML file" accept=".txt"></q-file>-->
                 <q-input id="ijii1" v-model="file_route" :dense="true" label="Insert the route to your imzML file"></q-input>
                 <q-input id="ijii1-2" v-model="file_name" :dense="true" label="Insert the name of your imzML file"></q-input>
                 <p id="i7brk">full route: {{full_route}} {{warning_fr}}</p>
-            </div>
-        </div>
                 <div class="row">
-            <div class="st-col col-12 col-sm st-module">
+                    <div class="st-col col-12 col-sm">
                         <q-input id="icc9d" v-model="Nmass" :dense="true" label="Mass Value" type="number" :rules="[
                             val => val >= 0 || 'Need positive mass values',
                             ]"></q-input>
                     </div>
-            <div class="st-col col-12 col-sm st-module">
+                    <div class="st-col col-12 col-sm">
                         <q-input id="iqt3l" step="0.01" v-model="Tol" :dense="true" label="Tolerance" type="number" :rules="[
                         val => !!val || '* Required',
                         val => val >= 0 &amp;&amp; val <= 1  || 'Needs to be in range between 0 and 1',
@@ -28,24 +25,33 @@
                     </div>
                 </div>
                         <div class="row">
-            <div class="st-col col-12 col-sm st-module">
+                            <div class="st-col col-12 col-sm">
-                <div class="row">
-                    <div class="st-col col-12 col-sm st-module">
                                 <q-toggle id="igqon" v-on:click="triqEnabled" v-model="triqEnabled" color="blue" label="Add TrIQ!"></q-toggle>
                             </div>
                         </div>
+                        <div class="row">
+                            <div class="st-col col-12 col-sm-8">
                                 <q-input id="i28wb" step="0.01" v-model="triqProb" :dense="true" label="TrIQ Probability" type="number" :rules="[
                                 val => val >= 0 &amp;&amp; val <= 1  || 'Needs to be in range between 0 and 1',
                                 ]" :readonly="!triqEnabled"></q-input>
-                <q-btn id="isfqg" color="primary" icon="play_arrow" v-on:click="Main_Process = true" label="Start"></q-btn>
+                            </div>
+                            <div class="st-col col-12 col-sm-4">
+                                <q-input id="i28wb-2" step="1" v-model="triqColor" :dense="true" label="TrIQ Color" type="number" :rules="[
+                                val => val >= 0 &amp;&amp; val <= 256  || 'Needs to be in range between 1 and 256',
+                                ]" :readonly="!triqEnabled"></q-input>
                             </div>
                         </div>
+                        <q-btn id="isfqg" :disabled="Disab_btn" color="primary" icon="play_arrow" v-on:click="Main_Process = true" label="Start"></q-btn>
                    <p>{{msg}}</p>
-        <plotly id="i1j1o" data="plotdata"></plotly>
+            </div>
+        </div>
+        
+        
+        <!--<plotly id="i1j1o" data="plotdata"></plotly>-->
     </div>
     <div class="st-col col-12 col-sm st-module">
         <div class="row">
-            <div class="st-col col-12 col-sm st-module">
+            <div class="st-col col-12 col-sm st-module"> <!--Right DIV-->
                 <h6>Image Visualizer</h6><br>
                 <p></p>
                 <q-btn id="ijhjl-2" color="primary" icon="arrow_back" label="Previous" v-on:click="ImgMinus = true"></q-btn>
@@ -56,7 +62,6 @@
                 <q-btn id="i3zt1-2" color="primary" icon="arrow_forward" label="Next" v-on:click="ImgPlusT = true"></q-btn>
                 <q-img id="i6e3p-2" :src="testT"></q-img>
                 <p>{{msgtriq}}</p>
-                <!--<q-img id="i6e3p-2" src="/Borrador_Julia_GUI.jpeg"></q-img>-->
             </div>
         </div>
     </div>