diff --git a/app.jl b/app.jl
index 9c0255f..aaa9767 100644
--- a/app.jl
+++ b/app.jl
@@ -54,7 +54,7 @@ include("./julia_imzML_visual.jl")
@in btnSearch=false # To search for files in your device
@in mainProcess=false # To generate images
@in compareBtn=false # To open dialog
- @in createSumPlot=false # To generate sum spectrum plot
+ @in createMeanPlot=false # To generate mean spectrum plot
@in createXYPlot=false # To generate an spectrum plot according to the xy values inputed
@in image3dPlot=false # To generate 3d plot based on current image
@in triq3dPlot=false # To generate 3d plot based on current triq image
@@ -290,13 +290,13 @@ include("./julia_imzML_visual.jl")
# Splitting the route with regex from imzml to mzml so the plotting can work
full_routeMz=replace(full_route, r"\.[^.]*$" => ".mzML")
if isfile(full_routeMz)
- # Start the sum spectrum creation on loading
+ # Start the mean spectrum creation on loading
progressSpectraPlot=true
btnPlotDisable=true
btnStartDisable=true
- msg="Loading SUM spectrum plot..."
+ msg="Loading mean spectrum plot..."
sTime=time()
- plotdata, plotlayout, xSpectraMz, ySpectraMz=sumSpectrumPlot(full_routeMz)
+ plotdata, plotlayout, xSpectraMz, ySpectraMz=meanSpectrumPlot(full_routeMz)
selectedTab="tab2"
progressSpectraPlot=false
btnPlotDisable=false
@@ -319,13 +319,13 @@ include("./julia_imzML_visual.jl")
btnSpectraDisable=false
SpectraEnabled=true
if isfile(full_routeMz)
- # Start the sum spectrum creation on loading
+ # Start the mean spectrum creation on loading
progressSpectraPlot=true
btnPlotDisable=true
btnStartDisable=true
- msg="Loading SUM spectrum plot..."
+ msg="Loading mean spectrum plot..."
sTime=time()
- plotdata, plotlayout, xSpectraMz, ySpectraMz=sumSpectrumPlot(full_routeMz)
+ plotdata, plotlayout, xSpectraMz, ySpectraMz=meanSpectrumPlot(full_routeMz)
selectedTab="tab2"
progressSpectraPlot=false
btnPlotDisable=false
@@ -469,15 +469,15 @@ include("./julia_imzML_visual.jl")
end
end
- @onbutton createSumPlot begin
- msg="Sum spectrum plot selected"
+ @onbutton createMeanPlot begin
+ msg="Mean spectrum plot selected"
sTime=time()
if isfile(full_routeMz) # Check if the file exists
progressSpectraPlot=true
btnPlotDisable=true
btnStartDisable=true
msg="Loading plot..."
- plotdata, plotlayout, xSpectraMz, ySpectraMz=sumSpectrumPlot(full_routeMz)
+ plotdata, plotlayout, xSpectraMz, ySpectraMz=meanSpectrumPlot(full_routeMz)
GC.gc() # Trigger garbage collection
if Sys.islinux()
ccall(:malloc_trim, Int32, (Int32,), 0) # Ensure julia returns the freed memory to OS
diff --git a/app.jl.html b/app.jl.html
index b25b0e9..0336595 100644
--- a/app.jl.html
+++ b/app.jl.html
@@ -64,14 +64,14 @@
-
+
- Sum Spectrum Plot
+ Mean spectrum plot
- Spectrum Plot (X,Y)
+ Spectrum plot (X,Y)
diff --git a/julia_imzML_visual.jl b/julia_imzML_visual.jl
index 2316c25..1316186 100644
--- a/julia_imzML_visual.jl
+++ b/julia_imzML_visual.jl
@@ -442,17 +442,17 @@ function padarray(A, padsize)
return padded
end
-# sumSpectrumPlot recieves the local directory of the image as a string,
+# meanSpectrumPlot recieves the local directory of the image as a string,
# returns the layout and data for the surface plotly plot
# this function loads the spectra data and makes a mean to display
# its values in the spectrum plot
-function sumSpectrumPlot(mzmlRoute::String)
+function meanSpectrumPlot(mzmlRoute::String)
spectraMz=LoadMzml(mzmlRoute)
xSpectraMz=Float64[]
ySpectraMz=Float64[]
layout=PlotlyBase.Layout(
- title="SUM spectrum plot",
+ title="Mean spectrum plot",
xaxis=PlotlyBase.attr(
title="m/z",
showgrid=true,