-
-
+
+
+
Julia mzML imzML analysis GUI
-Please make sure the ibd, the mzML and the imzML files are located in the same directory and have the same name.
-It may take a while to generate the image and the plot, please be patient.
-To generate the contour or surface plots, you have to select the desired image first using the interface.
+
+
+
+ Julia mzML imzML analysis GUI
+Please make sure the ibd, the mzML and the imzML files are located in the same directory and have the same + name.
+It may take a while to generate the image and the plot, please be patient.
+To generate the contour or surface plots, you have to select the desired image first using the interface.
+
+
+
+
+
+
+
+ {{msg}}
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
\ No newline at end of file
diff --git "a/ongoing_tasks.txt\n" "b/ongoing_tasks.txt\n"
index db88c2a..4879e9c 100644
--- "a/ongoing_tasks.txt\n"
+++ "b/ongoing_tasks.txt\n"
@@ -4,8 +4,7 @@ PENDING
Create function that makes the imzML from mzML files ?
Possibility to add multiple imzML to process at once ?
Per pixel of image plot creation for spectra
- Multiple spectra plot types
- Even faster initial boot and subsectuential boot
+ Add comparison image (rotate, transform, translate, transparency) CURRENTLY ONGOING
DONE
Quicker start for julia GUI
@@ -19,8 +18,10 @@ DONE
3d topology plots for images
2d contour plots for images
Image flip upside down
- Tag for time it takes in creating image and creating plots
+ Measure for the time it takes creating image or plot
Rotate vertical images
Easier input for files
TrIQ default values
Comparative for two views
+ Even faster initial boot and subsectuential boot
+ Multiple spectra plot types
diff --git a/start_MSI_GUI.jl b/start_MSI_GUI.jl
index 5d90613..2935fa3 100644
--- a/start_MSI_GUI.jl
+++ b/start_MSI_GUI.jl
@@ -1,13 +1,25 @@
using Pkg
Pkg.activate(".")
Pkg.instantiate()
-Pkg.update()
Pkg.gc()
-Pkg.add("Libz") ; Pkg.add("PlotlyBase") ; Pkg.add("CairoMakie") ; Pkg.add("Colors") ; Pkg.add("Statistics") ; Pkg.add("NaturalSort") ; Pkg.add("GenieFramework") ;Pkg.add("Genie")
-Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML") # With this we ensure it uses the latest library iteration
-Pkg.add("Images") ; Pkg.add("LinearAlgebra")
-Pkg.add("NativeFileDialog")
-Pkg.add("StipplePlotly")
+
+packages = [
+ "GenieFramework", "Libz", "PlotlyBase", "CairoMakie", "Colors",
+ "Statistics", "NaturalSort", "Genie",
+ "Images", "LinearAlgebra", "NativeFileDialog", "StipplePlotly"
+]
+
+# Check for missing packages
+for pkg in packages
+ if !(pkg in keys(Pkg.dependencies()))
+ Pkg.add(pkg)
+ end
+end
+
+# Add library for mzML imzML from GitHub if missing
+if !("julia_mzML_imzML" in keys(Pkg.dependencies()))
+ Pkg.add(url="https://github.com/CINVESTAV-LABI/julia_mzML_imzML")
+end
using Genie
@@ -27,3 +39,5 @@ Genie.loadapp()
@async run(`start $url`) # For Windows
end
end
+
+wait()
\ No newline at end of file
+
+
+
+
+
+
+ Search for your imzML file in your device
+
+
+
+
+
+
+
+ Image Contour Plot
+
+
+
+
+
+ TrIQ Contour Plot
+
+
+
+
+
+ Image 3D Plot
+
+
+
+
+
+ TrIQ 3D Plot
+
+
+
+
-
-
-
-
-
-
-
-
- {{msg}}
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
-
-
-
-
-
-
- Search for your imzML file in your device
-
-
-
-
-
-
-
- Sum Spectrum Plot
-
-
-
-
-
- Image Contour Plot
-
-
-
-
-
- TrIQ Contour Plot
-
-
-
-
-
- Image 3D Plot
-
-
-
-
-
- TrIQ 3D Plot
-
-
-
-
-
- full route: {{full_route}} {{warning_fr}}
- -
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- {{msg}}
-
-
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- Image Visualizer
-
-
-
-
-
-
-
-
-
- {{msgimg}}
-TrIQ Visualizer
-
-
-
-
-
-
-
-
-
- {{msgtriq}}
-full route: {{full_route}}
+ +
+
-
-
+
+
+
Warning
- Compare two diferent images or plots in a larger screen
-
+
+
+
+
+
+
+
-
-
+
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- {{msgimg}}
-
-
-
-
-
-
-
-
-
- {{msgtriq}}
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
-
-
-
-
-
-
-
-
- {{msgimg}}
-
-
-
-
-
-
-
-
-
- {{msgtriq}}
-
+
+
+
+
+
+
+
+
-
-
-
+
+
+
+ Sum Spectrum Plot
+
+
+
+
+ Spectrum Plot (X,Y)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ {{msg}}
+
+
+
+
+
+
+
+
+
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Image Visualizer
+
+
+
+
+
+
+
+
+
+ {{msgimg}}
+TrIQ Visualizer
+
+
+
+
+
+
+
+
+
+ {{msgtriq}}
+Warning
+ Compare two diferent images or plots in a larger screen
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ {{msgimg}}
+
+
+
+
+
+
+
+
+
+ {{msgtriq}}
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ {{msgimg}}
+
+
+
+
+
+
+
+
+
+ {{msgtriq}}
+