imzML & mzML Data Pre-Treatment
Quick Test (Subset Processing)
Process only the first N spectra to quickly test parameters.

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Preview Spectrum:
Mean spectrum plot Sum Spectrum plot Spectrum plot (X,Y) Spectrum plot (ID)
Preprocessing Pipeline
Method
The algorithm to use for baseline correction.


Parameters
Method
The normalization method to apply.



Method
The alignment algorithm.


Parameters
Parameters
Method
The peak detection algorithm.


Parameters
Peak Quality Filters
Method
The binning strategy.

Parameters
imzML & mzML Data Processor

Please make sure the ibd and imzML file are located in the same directory and have the same name.
It may take a while to generate the slice / spectrum, please be patient.
To generate the contour or surface plots, you have to select the desired slice first using the interface.

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Mean spectrum plot Sum Spectrum plot Spectrum plot (X,Y) Spectrum plot (ID)
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Image topography Plot TrIQ topography Plot Image surface Plot TrIQ Surface Plot Over normal image Over TrIQ image
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mzML to imzML Converter

Select the .mzML file and the corresponding .txt synchronization file to convert them into an .imzML/.ibd pair.

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Spectrum View
Before Preprocessing
After Preprocessing
Image visualizer
TrIQ visualizer
Mean spectrum plot Sum Spectrum plot Spectrum plot (X,Y) Spectrum plot (ID)
Warning
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Compare two different images or plots
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Batch Process Summary
 
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Dataset Summary
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No metadata found in registry for this dataset.

You may need to process the file first.